From CDC-Authored Genomics Publication Database
This database contains CDC-authored publications in public health genomics including infectious diseases, newborn screening, reproductive health, genetic testing, cancer, chronic diseases, birth defects and developmental disabilities, environmental and occupational health as well as laboratory, bioinformatics and statistical methods.
- Epidemiology of rubella infection and genotyping of rubella virus in Cote d'Ivoire, 2012-2016.
Kadjo Herve A et al. Journal of medical virology 2018 Jul - Safety, immunogenicity and protection of A(H3N2) live attenuated influenza vaccines containing wild-type nucleoprotein in a ferret model.
Korenkov Daniil A et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2018 Jun 6495-104 - Multistate outbreak of Salmonella Paratyphi B variant L(+) tartrate(+) and Salmonella Weltevreden infections linked to imported frozen raw tuna: USA, March-July 2015.
Hassan R et al. Epidemiology and infection 2018 Jun 1-7 - Collaborative Method Performance Study of the Measurement of Nicotine, its Metabolites, and Total Nicotine Equivalents in Human Urine.
Wang Lanqing et al. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2018 May - Molecular epidemiology of Candida auris in Colombia reveals a highly-related, country-wide colonization with regional patterns in Amphotericin B resistance.
Escandón Patricia et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2018 May - Molecular Epidemiology and the Transformation of HIV Prevention.
Oster Alexandra M et al. JAMA 2018 Apr - Epidemiology and molecular characterization of Neisseria lactamica carried in 11-19 years old students in Salvador, Brazil.
Moura Ana Rafaela Silva Simões et al. International journal of medical microbiology : IJMM 2018 Mar - Statistical adjustment of culture-independent diagnostic tests for trend analysis in the Foodborne Diseases Active Surveillance Network (FoodNet), USA.
Gu Weidong et al. International journal of epidemiology 2018 Mar - Epidemiology and Molecular Identification and Characterization of Mycoplasma pneumoniae, South Africa, 2012-2015.
Carrim Maimuna et al. Emerging infectious diseases 2018 Mar 24(3) 506-513 - Comparative genome analysis reveals a complex population structure of Legionella pneumophila subspecies.
Kozak-Muiznieks Natalia A et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2018 Feb - Salmonella epidemiology: A whirlwind of change.
Besser John M et al. Food microbiology 2018 May 55-59 - Molecular characterisation of measles virus strains among refugees from Central African Republic in Cameroon in 2014.
Ndombo P K et al. Epidemiology and infection 2018 Jan 1-5 - Epidemiology of sapovirus infections in a birth cohort in Peru.
Sánchez Gerardo J et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2017 Dec - Phylogeny and antimicrobial resistance in Neisseria gonorrhoeae isolates from Rio de Janeiro, Brazil.
Costa-Lourenço Ana Paula Ramalho et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2017 Dec - Impact of sample collection participation on the validity of estimated measures of association in the National Birth Defects Prevention Study when assessing gene-environment interactions.
Jenkins Mary M et al. Genetic epidemiology 2017 Dec 41(8) 834-843 - Human Genome Sequencing at the Population Scale: A Primer on High-Throughput DNA Sequencing and Analysis.
Goldfeder Rachel L et al. American journal of epidemiology 2017 Oct 186(8) 1000-1009 - SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology.
Petkau Aaron et al. Microbial genomics 2017 Jun (6) e000116 - Pediatric norovirus GII.4 infections in Nicaragua, 1999-2015.
Bucardo Filemón et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2017 Oct 55305-312 - Editorial: Emergence of Gene-Environment Interaction Analysis in Epidemiologic Research.
Khoury Muin J et al. American journal of epidemiology 2017 Oct 186(7) 751-752 - Molecular Epidemiology of Cryptosporidiosis in China.
Feng Yaoyu et al. Frontiers in microbiology 2017 81701 - Subtype analysis of zoonotic pathogen Cryptosporidium skunk genotype.
Yan Wenchao et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2017 Aug - Emerging issues, challenges, and changing epidemiology of fungal disease outbreaks.
Benedict Kaitlin et al. The Lancet. Infectious diseases 2017 Jul - PhredEM: a phred-score-informed genotype-calling approach for next-generation sequencing studies.
Liao Peizhou et al. Genetic epidemiology 2017 May - Pioneer study of population genetics of Rhodnius ecuadoriensis (Hemiptera: Reduviidae) from the central coast and southern Andean regions of Ecuador.
Villacís Anita G et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2017 May - Molecular epidemiology of hepatitis B virus infection in Tanzania.
Forbi Joseph C et al. The Journal of general virology 2017 May - Molecular epidemiology of influenza A(H1N1)PDM09 hemagglutinin gene circulating in São Paulo State , Brazil: 2016 anticipated influenza season.
Santos Katia Corrêa de Oliveira et al. Revista do Instituto de Medicina Tropical de Sao Paulo 2017 Apr 59e9 - A Comparative Analysis of the Lyve-SET Phylogenomics Pipeline for Genomic Epidemiology of Foodborne Pathogens.
Katz Lee S et al. Frontiers in microbiology 2017 375 - Increasing HIV-1 subtype diversity in seven states, United States, 2006-2013.
Oster Alexandra M et al. Annals of epidemiology 2017 Feb - Bayesian inference reveals ancient origin of simian foamy virus in orangutans.
Reid Michael J C et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2017 Mar - Molecular Epidemiology of Giardia, Blastocystis and Cryptosporidium among Indigenous Children from the Colombian Amazon Basin.
Sánchez Angie et al. Frontiers in microbiology 2017 8248 - Genomic epidemiology of penicillin non-susceptible pneumococci with non-vaccine serotypes causing invasive disease in the USA.
Andam Cheryl P et al. Journal of clinical microbiology 2017 Jan - The molecular epidemiology of Pf k13 mutations in Senegal using targeted amplicon deep sequencing.
Talundzic Eldin et al. Antimicrobial agents and chemotherapy 2017 Jan - Multistate outbreak of Listeria monocytogenes infections linked to whole apples used in commercially produced, prepackaged caramel apples: United States, 2014-2015.
Angelo K M et al. Epidemiology and infection 2017 Jan 1-9 - Epidemiology and Molecular Characteristics of Mycoplasma pneumoniae During an Outbreak of M. pneumoniae-Associated Stevens-Johnson Syndrome.
Watkins Louise K Francois et al. The Pediatric infectious disease journal 2017 Jan - Norovirus and Sapovirus Epidemiology and Strain Characteristics among Navajo and Apache Infants.
Grant Lindsay R et al. PloS one 2017 (1) e0169491 - Applied epidemiology and public health: are we training the future generations appropriately?
Brownson Ross C et al. Annals of epidemiology 2016 Dec - How Chikungunya Virus Virology Affects Its Epidemiology and Transmission: Implications for Influencing Public Health.
Powers Ann M et al. The Journal of infectious diseases 2016 Dec (suppl 5) S449-S452 - Molecular, Spatial, and Field Epidemiology Suggesting TB Transmission in Community, Not Hospital, Gaborone, Botswana.
Surie Diya et al. Emerging infectious diseases 2017 Mar 23(3) 487-490 - Genomic epidemiology of gonococcal resistance to extended spectrum cephalosporins, macrolides, and fluoroquinolones in the US, 2000-2013.
Grad Yonatan H et al. The Journal of infectious diseases 2016 Sep - Development of a multilocus sequence typing tool for high-resolution subtyping and genetic structure characterization of Cryptosporidium ubiquitum.
Tang Ying et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2016 Sep 256-261 - Epidemiology matters: peering inside the "black box" in economic evaluations of genetic testing.
Grosse Scott D et al. Genetics in medicine : official journal of the American College of Medical Genetics 2016 Sep - Population-Based Precision Cancer Screening: A Symposium on Evidence, Epidemiology, and Next Steps.
Marcus Pamela M et al. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2016 Nov 25(11) 1449-1455 - Genotypes of rubella virus and the epidemiology of rubella infections in the Democratic Republic of the Congo, 2004-2013.
Pukuta Elizabeth et al. Journal of medical virology 2016 Oct (10) 1677-84 - Phylogenetic and geographic patterns of bartonella host shifts among bat species.
McKee Clifton D et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2016 Jul - The Cancer Epidemiology Descriptive Cohort Database: A Tool to Support Population-Based Interdisciplinary Research.
Kennedy Amy E et al. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2016 Jul - Epidemiology of a Novel Recombinant MERS-CoV in Humans in Saudi Arabia.
Assiri Abdullah M et al. The Journal of infectious diseases 2016 Jun - Common occurrence of Cryptosporidium hominis in horses and donkeys.
Jian Fuchun et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2016 Jun 43261-266 - Detailed phylogenetic analysis of primate T-lymphotropic virus type 1 (PTLV-1) sequences from orangutans (Pongo pygmaeus) reveals new insights into the evolutionary history of PTLV-1 in Asia.
Reid Michael J C et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2016 May - Molecular characterization of the first G24P[14] rotavirus strain detected in humans.
Ward M Leanne et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2016 May - Origin and spread of HIV-1 in persons who inject drugs in Bulgaria.
Alexiev Ivailo et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2016 May - Protocol for a population-based molecular epidemiology study of tuberculosis transmission in a high HIV-burden setting: the Botswana Kopanyo study.
Zetola N M et al. BMJ open 2016 (5) e010046 - Evolving epidemiology of reported cryptosporidiosis cases in the United States, 1995-2012.
Painter J E et al. Epidemiology and infection 2016 Jun 144(8) 1792-802 - Characterizing the genetic diversity of the monkey malaria parasite Plasmodium cynomolgi.
Sutton Patrick L et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2016 Mar - Molecular Epidemiology and Transmission Dynamics of Recent and Long-Term HIV-1 Infections in Rural Western Kenya.
Zeh Clement et al. PloS one 2016 (2) e0147436 - Relationship Between Mean Leucocyte Telomere Length and Measures of Allostatic Load in US Reproductive-Aged Women, NHANES 1999-2002.
Ahrens Katherine A et al. Paediatric and perinatal epidemiology 2016 Feb - What Predicts an Advanced-Stage Diagnosis of Breast Cancer? Sorting Out the Influence of Method of Detection, Access to Care, and Biologic Factors.
Lipscomb Joseph et al. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2016 Jan - Genomic Epidemiology of Hypervirulent Serogroup W, ST-11 Neisseria meningitidis.
Mustapha Mustapha M et al. EBioMedicine 2015 Oct (10) 1447-55 - Planning for the Future of Epidemiology in the Era of Big Data and Precision Medicine.
Khoury Muin J et al. American journal of epidemiology 2015 Dec - A Large Outbreak of Hepatitis C Virus Infections in a Hemodialysis Clinic.
Nguyen Duc B et al. Infection control and hospital epidemiology 2015 Nov 1-9 - Phenotypic variability confirmed by nuclear ribosomal DNA suggests a possible natural hybrid zone of Triatoma brasiliensis species complex.
Costa Jane et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2015 Oct - Healthcare-Associated Transmission of Plasmodium falciparum in New York City.
Lee Ellen H et al. Infection control and hospital epidemiology 2015 Oct 1-3 - Genetic variability and population structure of Plasmodium falciparum parasite populations from different malaria ecological regions of Kenya.
Ingasia Luicer A et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2015 Oct - A Field-Validated Approach Using Surveillance and Genotyping Data to Estimate Tuberculosis Attributable to Recent Transmission in the United States.
France Anne Marie et al. American journal of epidemiology 2015 Nov (9) 799-807 - Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone.
Park Daniel J et al. Cell 2015 Jun 18. (7) 1516-26 - Challenges posed by tick-borne rickettsiae: eco-epidemiology and public health implications.
Eremeeva Marina E et al. Front Public Health 2015 355 - Epidemiology and molecular characteristics of norovirus GII.4 Sydney outbreaks in Taiwan, January 2012-December 2013.
Wu Fang-Tzy et al. J. Med. Virol. 2015 Sep 87(9) 1462-70 - Molecular Epidemiology of Plasmodium falciparum Malaria Outbreak, Tumbes, Peru, 2010-2012.
Baldeviano G Christian et al. Emerging Infect. Dis. 2015 May 21(5) 797-803 - Geographic and temporal trends in the molecular epidemiology and genetic mechanisms of transmitted HIV-1 drug resistance: an individual-patient- and sequence-level meta-analysis.
Rhee Soo-Yon et al. PLoS Med. 2015 Apr 12(4) e1001810 - Evolution of the "drivers" of translational cancer epidemiology: analysis of funded grants and the literature.
Lam Tram Kim et al. Am. J. Epidemiol. 2015 Apr 1. 181(7) 451-8 - Lam et al. respond to "Driving for further evolution".
Lam Tram Kim et al. American journal of epidemiology 2015 Apr 181(7) 463 - Opportunities for translational epidemiology: the important role of observational studies to advance precision oncology.
Marrone Michael et al. Cancer Epidemiol. Biomarkers Prev. 2015 Mar 24(3) 484-9 - Whole genome detection of rotavirus mixed infections in human, porcine and bovine samples co-infected with various rotavirus strains collected from sub-Saharan Africa.
Nyaga Martin M et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2015 Apr 321-34 - Epidemiology and molecular characterization of Cryptosporidium spp. in humans, wild primates, and domesticated animals in the Greater Gombe Ecosystem, Tanzania.
Parsons Michele B et al. PLoS Negl Trop Dis 2015 Feb 9(2) e0003529 - The authors reply.
Spitz Margaret R et al. American journal of epidemiology 2015 Mar 181(5) 361 - Genomic epidemiology of multidrug-resistant Mycobacterium tuberculosis during transcontinental spread.
Coscolla Mireia et al. J. Infect. Dis. 2015 Jan 18. - Molecular genotyping and quantitation assay for rotavirus surveillance.
Liu Jie et al. Journal of virological methods 2015 Mar 157-63 - Special issue on 'genetic diversity and evolution of rotavirus strains: possible impact of global immunization programs'.
Bányai Krisztián et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2014 Dec 375-6 - The Cancer Genomics and Epidemiology Navigator: An NCI online tool to enhance cancer epidemiology research.
Schully Sheri D et al. Cancer Epidemiol. Biomarkers Prev. 2014 Nov 23(11) 2610-1 - Phylogeny of imported and reestablished wild polioviruses in theDemocratic Republic of the Congo from 2006 to 2011.
Gumede Nicksy et al. J. Infect. Dis. 2014 Nov 1. 210 Suppl 1S361-7 - Molecular epidemiology of human G2P[4] rotaviruses in Taiwan, 2004-2011.
Wu Fang-Tzy et al. Infect. Genet. Evol. 2014 Dec 28530-6 - The next generation of large-scale epidemiologic research: implications for training cancer epidemiologists.
Spitz Margaret R et al. Am. J. Epidemiol. 2014 Nov 15. 180(10) 964-7 - Review of global rotavirus strain prevalence data from six years post vaccine licensure surveillance: is there evidence of strain selection from vaccine pressure?
Dóró Renáta et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2014 Dec 446-61 - Recent population expansions of hepatitis B virus in the United States.
Ramachandran Sumathi et al. J. Virol. 2014 Dec 88(24) 13971-80 - Editorial: Updated guidance on human genome epidemiology (HuGE) reviews and meta-analyses of genetic associations.
Gwinn Marta et al. American journal of epidemiology 2014 Sep 180(6) 559-61 - Genomic epidemiology of Salmonella enterica serotype Enteritidis based on population structure of prevalent lineages.
Deng Xiangyu et al. Emerging Infect. Dis. 2014 Sep 20(9) 1481-9 - Approach to molecular characterization of partially and completely untyped samples in an Indian rotavirus surveillance program.
Babji Sudhir et al. Vaccine 2014 Aug 11. 32 Suppl 1A84-8 - Molecular epidemiology of the pertussis epidemic in Washington State in 2012.
Bowden Katherine E et al. J. Clin. Microbiol. 2014 Oct 52(10) 3549-57 - A primer series on -omic technologies for the practice of epidemiology.
Khoury Muin J et al. American journal of epidemiology 2014 Jul 180(2) 127-8 - Challenges of using molecular serotyping for surveillance of pneumococcal disease.
Magomani Victoria et al. J. Clin. Microbiol. 2014 Sep 52(9) 3271-6 - Whole-genome analysis of Exserohilum rostratum from an outbreak of fungal meningitis and other infections.
Litvintseva Anastasia P et al. J. Clin. Microbiol. 2014 Sep 52(9) 3216-22 - Dense genotyping of immune-related loci identifies variants associated with clearance of HPV among HIV-positive women in the HIV epidemiology research study (HERS).
Sudenga Staci L et al. PLoS ONE 2014 9(6) e99109 - Identification and epidemiology of a rare HoBi-like pestivirus strain in Bangladesh.
Haider N et al. Transbound Emerg Dis 2014 Jun 61(3) 193-8 - Molecular surveillance of rotavirus infection in the Democratic Republic of the Congo August 2009 to June 2012.
Pukuta Elizabeth S et al. Pediatr. Infect. Dis. J. 2014 Apr 33(4) 355-9 - Strengthening the Reporting of Molecular Epidemiology for Infectious Diseases (STROME-ID): an extension of the STROBE statement.
Field Nigel et al. The Lancet. Infectious diseases 2014 Apr (4) 341-52 - Molecular epidemiology of silent introduction and sustained transmission of wild poliovirus type 1, Israel, 2013.
Shulman L M et al. Euro Surveill. 2014 19(7) 20709 - High prevalence and two dominant host-specific genotypes of Coxiella burnetii in U.S. milk.
Pearson Talima et al. BMC Microbiol. 2014 1441 - Q&A: Muin Khoury on cancer epidemiology.
Khoury Muin J et al. Cancer Discov 2014 Feb 4(2) 140 - Genomic epidemiology of Neisseria gonorrhoeae with reduced susceptibility to cefixime in the USA: a retrospective observational study.
Grad Yonatan H et al. Lancet Infect Dis 2014 Mar 14(3) 220-6 - Molecular epidemiology of contemporary G2P[4] human rotaviruses cocirculating in a single U.S. community: footprints of a globally transitioning genotype.
Dennis Allison F et al. J. Virol. 2014 Apr 88(7) 3789-801 - Epigenetic research in cancer epidemiology: trends, opportunities, and challenges.
Verma Mukesh et al. Cancer Epidemiol. Biomarkers Prev. 2014 Feb 23(2) 223-33
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