CDC-Authored Publications Update|PHGKB
Publication Date: Jun 01, 2020
CDC-Authored Publications Update
The latest CDC publications in genomics and precision health.
- Analysis of the reiteration regions (R1 to R5) of varicella-zoster virus.
Nancy J Jensen, Daniel P Depledge, Terry Fei Fan Ng, Jessica Leung, Mark Quinlivan, Kay W Radford, Jennifer Folster, Hung-Fu Tseng, Philip LaRussa, Steven J Jacobsen, Judith Breuer, and D Scott Schmid
Virology 2020 Jul 38-50
- Microbiome disturbance and resilience dynamics of the upper respiratory tract during influenza A virus infection.
Drishti Kaul, Raveen Rathnasinghe, Marcela Ferres, Gene S Tan, Aldo Barrera, Brett E Pickett, Barbara A Methe, Suman Das, Isolda Budnik, Rebecca A Halpin, David Wentworth, Mirco Schmolke, Ignacio Mena, Randy A Albrecht, Indresh Singh, Karen E Nelson, Adolfo García-Sastre, Chris L Dupont, and Rafael A Medina
Nature communications 2020 May (1) 2537
- Novel PCR exclusion assay to detect spotted fever group rickettsiae in the lone star tick (Amblyomma americanum).
Shari L Lydy, Amanda Jo Williams-Newkirk, Ellen J Dugan, Jasmine R Hensley, and Gregory A Dasch
Ticks and tick-borne diseases 2020 Apr 101453
- A New Pneumococcal Capsule Type, 10D, is the 100th Serotype and Has a Large cps Fragment from an Oral Streptococcus.
Feroze Ganaie, Jamil S Saad, Lesley McGee, Andries J van Tonder, Stephen D Bentley, Stephanie W Lo, Rebecca A Gladstone, Paul Turner, Jeremy D Keenan, Robert F Breiman, and Moon H Nahm
mBio 2020 May (3)
- Anti-PfGARP activates programmed cell death of parasites and reduces severe malaria.
Dipak K Raj, Alok Das Mohapatra, Anup Jnawali, Jenna Zuromski, Ambrish Jha, Gerald Cham-Kpu, Brett Sherman, Rachel M Rudlaff, Christina E Nixon, Nicholas Hilton, Andrew V Oleinikov, Olga Chesnokov, Jordan Merritt, Sunthorn Pond-Tor, Lauren Burns, Grant Jolly, Choukri Ben Mamoun, Edward Kabyemela, Atis Muehlenbachs, Lynn Lambert, Sachy Orr-Gonzalez, Nina F Gnädig, David A Fidock, Sangshin Park, Jeffrey D Dvorin, Norbert Pardi, Drew Weissman, Barbara L Mui, Ying K Tam, Jennifer F Friedman, Michal Fried, Patrick E Duffy, and Jonathan D Kurtis
Nature 2020 Apr
- Etiology of Prelingual Hearing Loss in the Universal Newborn Hearing Screening Era: A Scoping Review.
Ashley Satterfield-Nash, Ayesha Umrigar, and Tatiana M Lanzieri
Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery 2020 May 194599820921870
- NS2B/NS3 mutations enhance the infectivity of genotype I Japanese encephalitis virus in amplifying hosts.
Yi-Chin Fan, Jian-Jong Liang, Jo-Mei Chen, Jen-Wei Lin, Yi-Ying Chen, Kuan-Hsuan Su, Chang-Chi Lin, Wu-Chun Tu, Ming-Tang Chiou, Shan-Chia Ou, Gwong-Jen J Chang, Yi-Ling Lin, and Shyan-Song Chiou
PLoS pathogens 2019 15(8) e1007992
- Development of a rapid-viability PCR method for detection of Clostridioides difficile spores from environmental samples.
Alicia M Shams, Laura J Rose, and Judith A Noble-Wang
Anaerobe 2020 Feb 61102077
- Putative novel cps loci in a large global collection of pneumococci.
Andries J van Tonder, Rebecca A Gladstone, Stephanie W Lo, Moon H Nahm, Mignon du Plessis, Jennifer Cornick, Brenda Kwambana-Adams, Shabir A Madhi, Paulina A Hawkins, Rachel Benisty, Ron Dagan, Dean Everett, Martin Antonio, Keith P Klugman, Anne von Gottberg, Robert F Breiman, Lesley McGee, Stephen D Bentley, and
Microbial genomics 2019 5(7)
- Trends in Pretreatment HIV-1 Drug Resistance in Antiretroviral Therapy-naive Adults in South Africa, 2000-2016: A Pooled Sequence Analysis.
Benjamin Chimukangara, Richard J Lessells, Soo-Yon Rhee, Jennifer Giandhari, Ayesha B M Kharsany, Kogieleum Naidoo, Lara Lewis, Cherie Cawood, David Khanyile, Kassahun A Ayalew, Karidia Diallo, Reshmi Samuel, Gillian Hunt, Alain Vandormael, Babill Stray-Pedersen, Michelle Gordon, Tariro Makadzange, Photini Kiepiela, Gita Ramjee, Johanna Ledwaba, Monalisa Kalimashe, Lynn Morris, Urvi M Parikh, John W Mellors, Robert W Shafer, David Katzenstein, Pravi Moodley, Ravindra K Gupta, Deenan Pillay, Salim S Abdool Karim, and Tulio de Oliveira
EClinicalMedicine 2019 Mar 926-34
- Genotypes of clinical varicella-zoster virus isolates from Manaus, Brazil.
Michele de Souza Bastos, Jennifer Folster, Otávio Primo de Alvarenga, Daniele de Araujo Sampaio, Ronaldo Marques Pontes Rabelo, Guilherme Augusto Pivoto João, Marcus Vinícius Guimarães de Lacerda, and D Scott Schmid
Revista da Sociedade Brasileira de Medicina Tropical 2019 May 52e20180166
- Evaluation of Mannose Binding Lectin Gene Variants in Pediatric Influenza Virus-Related Critical Illness.
Emily R Levy, Wai-Ki Yip, Michael Super, Jill M Ferdinands, Anushay J Mistry, Margaret M Newhams, Yu Zhang, Helen C Su, Gwenn E McLaughlin, Anil Sapru, Laura L Loftis, Scott L Weiss, Mark W Hall, Natalie Cvijanovich, Adam Schwarz, Keiko M Tarquinio, Peter M Mourani, , and Adrienne G Randolph
Frontiers in immunology 2019 101005
- Detection of TR 34 /L98H CYP51A Mutation through Passive Surveillance for Azole-Resistant Aspergillus fumigatus in the United States from 2015 to 2017.
Elizabeth L Berkow, Natalie S Nunnally, Alex Bandea, Randall Kuykendall, Karlyn Beer, and Shawn R Lockhart
Antimicrobial agents and chemotherapy 2018 62(5)
- Elevated Plasma Moxifloxacin Concentrations and SLCO1B1 g.-11187G>A Polymorphism in Adults with Pulmonary Tuberculosis.
Marc Weiner, Jon Gelfond, Teresa L Johnson-Pais, Melissa Engle, Charles A Peloquin, John L Johnson, Erin E Sizemore, and William R Mac Kenzie
Antimicrobial agents and chemotherapy 2018 62(5)
- Phylogenetic Evidence for the Existence of Multiple Strains of Rickettsia parkeri in the New World.
Fernanda A Nieri-Bastos, Arlei Marcili, Rita de Sousa, Christopher D Paddock, and Marcelo B Labruna
Applied and environmental microbiology 2018 84(8)
- Host factors that influence mother-to-child transmission of HIV-1: genetics, coinfections, behavior and nutrition.
Sascha R Ellington, Caroline C King, and Athena P Kourtis
Future virology 2011 6(2) 1451-1469
- VKORC1-1639A allele influences warfarin maintenance dosage among Blacks receiving warfarin anticoagulation: a retrospective cohort study.
Fatima Donia Mili, Tenecia Allen, Paula Weinstein Wadell, W Craig Hooper, Christine De Staercke, Christopher J Bean, Cathy Lally, Harland Austin, and Nanette K Wenger
Future cardiology 2018 14(1) 15-26
- Duplex Real-Time PCR Assay Distinguishes Aedes aegypti From Ae. albopictus (Diptera: Culicidae) Using DNA From Sonicated First-Instar Larvae.
Linda Kothera, Brian Byrd, and Harry M Savage
Journal of medical entomology 2017 54(6) 1567-1572
- Rapid colorimetric detection of Zika virus from serum and urine specimens by reverse transcription loop-mediated isothermal amplification (RT-LAMP).
Amanda E Calvert, Brad J Biggerstaff, Nathan A Tanner, Molly Lauterbach, and Robert S Lanciotti
PloS one 2017 12(9) e0185340
- Interlaboratory validation of an improved method for detection of Cyclospora cayetanensis in produce using a real-time PCR assay.
Helen R Murphy, Hediye Nese Cinar, Gopal Gopinath, Kathy E Noe, Lacresha D Chatman, Nancy E Miranda, June H Wetherington, Jason Neal-McKinney, Gabrielle S Pires, Elizabeth Sachs, Kristopher J Stanya, Cynthia L Johnson, Fernanda S Nascimento, Monica Santin, Aleksey Molokin, Mansour Samadpour, Harish Janagama, Amy Kahler, Candace Miller, and Alexandre J da Silva
Food microbiology 2018 Feb 69170-178
- Evaluation of 24-locus MIRU-VNTR genotyping in Mycobacterium tuberculosis cluster investigations in four jurisdictions in the United States, 2006-2010.
Larry D Teeter, J Steven Kammerer, Smita Ghosh, Duc T M Nguyen, Padmaja Vempaty, Jane Tapia, Roque Miramontes, Wendy A Cronin, Edward A Graviss, and
Tuberculosis (Edinburgh, Scotland) 2017 1069-15
- Transcriptomics in toxicology.
Pius Joseph
Food and chemical toxicology : an international journal published for the British Industrial Biological Research Association 2017 Nov 109(Pt 1) 650-662
- Malonate degradation in Acinetobacter baylyi ADP1: operon organization and regulation by MdcR.
Julie L Stoudenmire, Alicia L Schmidt, Melissa P Tumen-Velasquez, Kathryn T Elliott, Nicole S Laniohan, S Walker Whitley, Nickolaus R Galloway, Melesse Nune, Michael West, Cory Momany, Ellen L Neidle, and Anna C Karls
Microbiology (Reading, England) 2017 May 163(5) 789-803
- Sequence variation in Plasmodium falciparum Histidine Rich Proteins 2 and 3 in Indian isolates: Implications for Malaria Rapid Diagnostic Test Performance.
Praveen Kumar Bharti, Himanshu Singh Chandel, Sri Krishna, Shrikant Nema, Amreen Ahmad, Venkatachalam Udhayakumar, and Neeru Singh
Scientific reports 2017 7(1) 1308
- Upregulation of miRNA-4776 in Influenza Virus Infected Bronchial Epithelial Cells Is Associated with Downregulation of NFKBIB and Increased Viral Survival.
Sreekumar Othumpangat, Nicole B Bryan, Donald H Beezhold, and John D Noti
Viruses 2017 9(5)
- Diagnosing acute HIV infection: The performance of quantitative HIV-1 RNA testing (viral load) in the 2014 laboratory testing algorithm.
Hsiu Wu, Stephanie E Cohen, Emily Westheimer, Cynthia L Gay, Laura Hall, Charles Rose, Lisa B Hightow-Weidman, Severin Gose, Jie Fu, and Philip J Peters
Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology 2017 9385-86
- Multi-center evaluation of one commercial and 12 in-house real-time PCR assays for detection of Mycoplasma pneumoniae.
Roger Dumke, Alvaro J Benitez, Victoria Chalker, Karolina Gullsby, Birgit Henrich, Carlos Hidalgo-Grass, Theo Hoogenboezem, Darja Kese, Katherine Loens, Jolanda Maaskant, Ayelet Michael-Gayego, Allon E Moses, Ran Nir-Paz, Suzan D Pas, Sabine Pereyre, Randi F Petersen, Meike Rosenblatt, Annemarie M C van Rossum, Søren A Uldum, Wendy W J Unger, Dominique Ursi, Jonas M Winchell, Cecile Bebear, and
Diagnostic microbiology and infectious disease 2017 Jun 88(2) 111-114
- Newborn Screening Quality Assurance Program for CFTR Mutation Detection and Gene Sequencing to Identify Cystic Fibrosis.
Miyono M Hendrix, Stephanie L Foster, and Suzanne K Cordovado
Journal of inborn errors of metabolism and screening 4
- Prevalence and Phylogenetic Analysis of Bartonella Species of Wild Carnivores and Their Fleas in Northwestern Mexico.
A M López-Pérez, L Osikowicz, Y Bai, J Montenieri, A Rubio, K Moreno, K Gage, G Suzán, and M Kosoy
EcoHealth 2017 14(1) 116-129
- Comparison of Babesia microti Real-Time Polymerase Chain Reaction Assays for Confirmatory Diagnosis of Babesiosis.
Samaly S Souza, Henry S Bishop, Patrick Sprinkle, and Yvonne Qvarnstrom
The American journal of tropical medicine and hygiene 2016 Dec 95(6) 1413-1416
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