sábado, 28 de enero de 2017

BMC Bioinformatics | Proceedings of X-meeting 2015: 11th International Conference of the AB3C + Brazilian Symposium on Bioinformatics: bioinformatics

BMC Bioinformatics | Proceedings of X-meeting 2015: 11th International Conference of the AB3C + Brazilian Symposium on Bioinformatics: bioinformatics

Biomed Central

BMC Bioinformatics


Proceedings of X-meeting 2015: 11th International Conference of the AB3C + Brazilian Symposium on Bioinformatics: bioinformatics


Publication of this supplement has not been supported by sponsorship. Information about the source of funding for publication charges can be found in the individual articles. The articles have undergone the journal's standard peer review process for supplements. The Supplement Editors declare that they have no competing interests.
São Paulo, Brazil
3-6 November 2015
Edited by Sergio Campos, Ronnie Alves, Marcelo Brandão, Ney Lemke and André Fujita
Related articles from X-meeting 2015 have been published as a supplement in BMC Genomics

    ProClaT, a new bioinformatics tool for in silico protein reclassification: case study of DraB, a protein coded from the draTGB operon in Azospirillum brasilense

    Azopirillum brasilense is a plant-growth promoting nitrogen-fixing bacteria that is used as bio-fertilizer in agriculture. Since nitrogen fixation has a high-energy demand, the reducti...
    Elisa Terumi Rubel, Roberto Tadeu Raittz, Nilson Antonio da Rocha Coimbra, Michelly Alves Coutinho Gehlen and Fábio de Oliveira Pedrosa
    BMC Bioinformatics 2016 17(Suppl 18):455
    Published on: 15 December 2016

    Homology modeling and molecular dynamics provide structural insights into tospovirus nucleoprotein

    Tospovirus is a plant-infecting genus within the family Bunyaviridae, which also includes four animal-infecting genera: Hantavirus, Nairovirus, Phlebovirus and Orthobunyavirus. Compared to these members, the s...
    Rayane Nunes Lima, Muhammad Faheem, João Alexandre Ribeiro Gonçalves Barbosa, Marcelo Depólo Polêto, Hugo Verli, Fernando Lucas Melo and Renato Oliveira Resende
    BMC Bioinformatics 2016 17(Suppl 18):489
    Published on: 15 December 2016

    Compromise or optimize? The breakpoint anti-median

    The median of k≥3 genomes was originally defined to find a compromise genome indicative of a common ancestor. However, in gene order comparisons, the usual definitions based on minimizing the sum of distances to ...
    Caroline Anne Larlee, Alex Brandts and David Sankoff
    BMC Bioinformatics 2016 17(Suppl 18):473
    Published on: 15 December 2016

    MUMAL2: Improving sensitivity in shotgun proteomics using cost sensitive artificial neural networks and a threshold selector algorithm

    This work presents a machine learning strategy to increase sensitivity in tandem mass spectrometry (MS/MS) data analysis for peptide/protein identification. MS/MS yields thousands of spectra in a single run wh...
    Fabio Ribeiro Cerqueira, Adilson Mendes Ricardo, Alcione de Paiva Oliveira, Armin Graber and Christian Baumgartner
    BMC Bioinformatics 2016 17(Suppl 18):472
    Published on: 15 December 2016

    GPCRs from fusarium graminearum detection, modeling and virtual screening - the search for new routes to control head blight disease

    Fusarium graminearum (FG) is one of the major cereal infecting pathogens causing high economic losses worldwide and resulting in adverse effects on human and animal health. Therefore, ...
    Emmanuel Bresso, Roberto Togawa, Kim Hammond-Kosack, Martin Urban, Bernard Maigret and Natalia Florencio Martins
    BMC Bioinformatics 2016 17(Suppl 18):463
    Published on: 15 December 2016

    Mirnacle: machine learning with SMOTE and random forest for improving selectivity in pre-miRNA ab initio prediction

    MicroRNAs (miRNAs) are key gene expression regulators in plants and animals. Therefore, miRNAs are involved in several biological processes, making the study of these molecules one of the most relevant topics ...
    Yuri Bento Marques, Alcione de Paiva Oliveira, Ana Tereza Ribeiro Vasconcelos and Fabio Ribeiro Cerqueira
    BMC Bioinformatics 2016 17(Suppl 18):474
    Published on: 15 December 2016

    SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology

    The evolution of Next-Generation Sequencing (NGS) has considerably reduced the cost per sequenced-base, allowing a significant rise of sequencing projects, mainly in prokaryotes. However, the range of availabl...
    Diego C. B. Mariano, Felipe L. Pereira, Edgar L. Aguiar, Letícia C. Oliveira, Leandro Benevides, Luís C. Guimarães, Edson L. Folador, Thiago J. Sousa, Preetam Ghosh, Debmalya Barh, Henrique C. P. Figueiredo, Artur Silva, Rommel T. J. Ramos and Vasco A. C. Azevedo
    BMC Bioinformatics 2016 17(Suppl 18):456
    Published on: 15 December 2016

    SnoReport 2.0: new features and a refined Support Vector Machine to improve snoRNA identification

    snoReport uses RNA secondary structure prediction combined with machine learning as the basis to identify the two main classes of small nucleolar RNAs, the box H/ACA snoRNAs and the bo...
    João Victor de Araujo Oliveira, Fabrizio Costa, Rolf Backofen, Peter Florian Stadler, Maria Emília Machado Telles Walter and Jana Hertel
    BMC Bioinformatics 2016 17(Suppl 18):464
    Published on: 15 December 2016

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