Publication Date: Aug 15, 2019
Advanced Molecular Detection Clips Content
NEWS
- New life of lab equipment makes science possible for researchers returning to their home countries
Cai D. STAT, Aug 9, 2019. - Biobanking Is Changing The World
Pandya J. Forbes, Aug 12, 2019. - Clostridium Difficile Speciation Occurring in Healthcare Settings, Genomic Study Suggests
GenomeWeb, Aug 12, 2019. - FDA approves new drug for highly resistant tuberculosis
Dall C. CIDRAP, Aug 14, 2019. - A Cure for Ebola? Two New Treatments Prove Highly Effective in Congo
McNeil DG Jr. New York Times, Aug 12, 2019. - Microbial Genes Characterized in Human Gut, Oral Microbiomes
GenomeWeb, Aug 14, 2019.
POLICY
- FDA Offers Guidance on Submitting NGS Data in Support of Antiviral Drugs
GenomeWeb, Jul 19, 2019.
CONCEPTS / COMMENTS
- Symposium report: One Health meets sequencing.
Egli Adrian et al. Microbes and infection 2019 Aug - Status and potential of bacterial genomics for public health practice: a scoping review.
Van Goethem Nina et al. Implementation science : IS 2019 Aug (1) 79
METHODS / TOOLS
- SRA Down Under: Cache and Analysis Platform for Infectious Disease.
Cuddihy Thom et al. Studies in health technology and informatics 2019 Aug 76-82
- cano-wgMLST_BacCompare: A Bacterial Genome Analysis Platform for Epidemiological Investigation and Comparative Genomic Analysis.
Liu Yen-Yi et al. Frontiers in microbiology 2019 1687 - Mercator: An R Package for Visualization of Distance Matrices
Abrams ZB, et al. bioRxiv, Aug 15, 2019. - quasitools: A Collection of Tools for Viral Quasispecies Analysis
Marinier E, et al. bioRxiv, Aug 13, 2019. - A short-term assessment of nascent HIV-1 transmission clusters among newly diagnosed individuals using envelope sequence-based phylogenetic analyses.
Kafando Alexis et al. AIDS research and human retroviruses 2019 Aug - Viral taxonomy derived from evolutionary genome relationships.
Dougan Tyler J et al. PloS one 2019 (8) e0220440 - Benchmarking Metagenomics Tools for Taxonomic Classification.
Ye Simon H et al. Cell 2019 Aug (4) 779-794 - Hierarchical Hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences.
Lakin Steven M et al. Communications biology 2019 294
EVOLUTION / ECOLOGY / POPULATIONS
- A molecular survey of Anaplasma, Ehrlichia, Bartonella and Theileria in ticks collected from southeastern China.
Hou Juan et al. Experimental & applied acarology 2019 Aug - Genome-Based Epidemiological Analysis of 13 Acinetobacter Strains Isolated from Blood Cultures of Hospitalized Patients from a University Hospital in Japan.
Oinuma Ken-Ichi et al. Japanese journal of infectious diseases 2019 Jul (4) 274-280 - Adaptation of host transmission cycle during Clostridium difficile speciation
Kumar N, et al. Nat Genet, Aug 12, 2019. - Revisiting the Global Epidemiology of Cholera in Conjuction With the Genomics of Vibrio cholerae .
Ramamurthy Thandavarayan et al. Frontiers in public health 2019 203 - Metagenome to phenome approach enables isolation and genomics characterization of Kalamiella piersonii gen. nov., sp. nov. from the International Space Station.
Singh Nitin Kumar et al. Applied microbiology and biotechnology 2019 Jun (11) 4483-4497 - Genetic Diversity of Sapoviruses among Inpatients in Germany, 2008-2018.
Mann Pia et al. Viruses 2019 Aug (8) - Epidemiological and Evolutionary Analysis of Dengue-1 Virus Detected in Guangdong during 2014: Recycling of Old and Formation of New Lineages.
Yu Jianhai et al. The American journal of tropical medicine and hygiene 2019 Aug - Bayesian phylodynamics of avian influenza A virus H9N2 in Asia with time-dependent predictors of migration.
Yang Jing et al. PLoS computational biology 2019 Aug (8) e1007189 - Improving risk assessment of the emergence of novel influenza A viruses by incorporating environmental surveillance.
Pepin Kim M et al. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 2019 Sep (1782) 20180346
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
- Specialization of small non-conjugative plasmids in Escherichia coli according to their family types.
Branger Catherine et al. Microbial genomics 2019 Aug - Whole-Genome Sequencing-Based Characterization of 100 Listeria monocytogenes Isolates Collected from Food Processing Environments over a Four-Year Period.
Hurley Daniel et al. mSphere 2019 Aug (4) - Association of Enterovirus D68 with Acute Flaccid Myelitis, Philadelphia, Pennsylvania, USA, 2009-2018.
Uprety Priyanka et al. Emerging infectious diseases 2019 Sep (9) - Second WIN International Conference on "Integrated approaches and innovative tools for combating insecticide resistance in vectors of arboviruses", October 2018, Singapore.
Corbel Vincent et al. Parasites & vectors 2019 Jul (1) 331
DETECTION / DIAGNOSIS
- Application of mini-MLST and whole genome sequencing in low diversity hospital extended-spectrum beta-lactamase producing Klebsiella pneumoniae population.
Bezdicek Matej et al. PloS one 2019 (8) e0221187 - Genetic Characterization and Enhanced Surveillance of Ceftriaxone-Resistant Neisseria gonorrhoeae Strain, Alberta, Canada, 2018.
Berenger Byron M et al. Emerging infectious diseases 2019 Sep (9) - An identification protocol for ESBL-producing Gram-negative bacteria bloodstream infections using a MinION nanopore sequencer.
Sakai Jun et al. Journal of medical microbiology 2019 Aug (8) 1219-1226 - Utility of targeted, amplicon-based deep sequencing to detect resistance to first-line tuberculosis drugs in Botswana.
Wang Qiao et al. Antimicrobial agents and chemotherapy 2019 Aug - Mass spectrometry-based proteomic techniques to identify cerebrospinal fluid biomarkers for diagnosing suspected central nervous system infections. A systematic review.
Bharucha Tehmina et al. The Journal of infection 2019 Aug - Acute Vector-Borne Viral Infection: Zika and MinION Surveillance.
de Jesus Jaqueline Goes et al. Microbiology spectrum 2019 Jul (4) - Strengthening laboratory capacity for detection of respiratory viral pathogens through the Global Health Security Agenda (GHSA) framework.
Whitaker Brett et al. African journal of laboratory medicine 2019 (1) 861 - The high genetic similarity between rhinoviruses and enteroviruses remains as a pitfall for molecular diagnostic tools: A three-year overview.
Andrés Cristina et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2019 Aug - Next-generation Sequencing Study of Pathogens in Serum from Patients with Febrile Jaundice in Sierra Leone.
Zhang Yi et al. Biomedical and environmental sciences : BES 2019 May (5) 363-370 - Antibodies to Enteroviruses in Cerebrospinal Fluid of Patients with Acute Flaccid Myelitis.
Mishra Nischay et al. mBio 2019 Aug (4) - A high-throughput and rapid method for accurate identification of emerging multidrug-resistant Candida auris.
Ahmad Ausaf et al. Mycoses 2019 Jun (6) 513-518 - eNose analysis of volatile chemicals from dogs naturally infected with Leishmania infantum in Brazil.
Staniek Monica E et al. PLoS neglected tropical diseases 2019 Aug (8) e0007599
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
- Measles transmission in an international airport - Taiwan, March-April 2018.
Huang Hsin-I et al. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases 2019 Aug - Molecular and epidemiological characteristics of human Puumala and Dobrava-Belgrade hantavirus infections, Germany, 2001 to 2017.
Faber Mirko et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2019 Aug (32)
ANTIMICROBIALS / VACCINES / INTERVENTIONS
- The evolution and characterization of influenza A(H7N9) virus under the selective pressure of peramivir.
Ge Yiyue et al. Virology 2019 Aug 58-67
HOST-MICROBE INTERACTIONS
- Long noncoding RNAs are involved in multiple immunological pathways in response to vaccination.
de Lima Diógenes S et al. Proceedings of the National Academy of Sciences of the United States of America 2019 Aug - Application of cell-free DNA sequencing in characterization of bloodborne microbes and the study of microbe-disease interactions.
Chiu Kuo-Ping et al. PeerJ 2019 e7426 - Human oral microbiome characterization and its association with environmental microbiome revealed by the Earth Microbiome Project
Wang J, et al. bioRxiv, Aug 12, 2019. - Hospital Microbiome Variations As Analyzed by High-Throughput Sequencing.
ElRakaiby Marwa T et al. Omics : a journal of integrative biology 2019 Aug
Note:
indicates that at least one CDC-affiliated author; indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice.Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by the CDC Office of Public Health Genomics to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS
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