Volume 34 Number 4 January 29 - February 5, 2015
Antimicrobials, Vaccines, Interventions
Ultradeep pyrosequencing of NS3 to predict response to triple therapy with protease inhibitors in previously treated chronic hepatitis C patients![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Larrat S, et al. J Clin Microbiol 2015; 53(2):389-397.
Larrat S, et al. J Clin Microbiol 2015; 53(2):389-397.
Viral genetic diversity and polymorphisms in a cohort of HIV-1 infected patients eligible for the initiation of antiretroviral therapy in Abuja, Nigeria.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Yang C, et al. AIDS Res Hum Retroviruses. 2015 Jan 12.
Yang C, et al. AIDS Res Hum Retroviruses. 2015 Jan 12.
Safety and immunogenicity of DNA vaccines encoding Ebolavirus and Marburgvirus wild-type glycoproteins in a phase I clinical trial![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Sarwar UN, et al. J Infect Dis 2015; 211 (4): 549-557.
Sarwar UN, et al. J Infect Dis 2015; 211 (4): 549-557.
Live virus vaccines based on a yellow fever vaccine backbone: standardized template with key considerations for a risk/benefit assessment![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Monath TP, et al. Vaccine. 2015 Jan 1;33(1):62-72.
Monath TP, et al. Vaccine. 2015 Jan 1;33(1):62-72.
Detection and Diagnosis
Isolation and development of bioluminescent reporter phages for bacterial dysentery![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Schofield DA, et al. J Clin Microbiol Infect Dis 2015 Feb;34(2):395-403.
Schofield DA, et al. J Clin Microbiol Infect Dis 2015 Feb;34(2):395-403.
Novel multiplex format of an extended multilocus variable-number-tandem-repeat analysis of Clostridium difficile correlates with tandem repeat sequence typing
Jensen MB, et al. J Microbiol Methods. 2015 Jan 22.
Jensen MB, et al. J Microbiol Methods. 2015 Jan 22.
DNA microarray-based PCR ribotyping of Clostridium difficile![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Schneeberg A, et al. J Clin Microbiol 2015; 53(2):433-442.
Schneeberg A, et al. J Clin Microbiol 2015; 53(2):433-442.
Development of a rapid multiplex PCR assay to genotype Pasteurella multocida strains by use of the lipopolysaccharide outer core biosynthesis locus![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Harper M, et al. J Clin Microbiol 2015; 53(2):477-485.
Harper M, et al. J Clin Microbiol 2015; 53(2):477-485.
Development of a multiple-locus variable-number tandem-repeat typing scheme for genetic fingerprinting of Burkholderia cenocepacia and application to nationwide epidemiological analysis![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Segonds C, et al. J Clin Microbiol 2015; 53(2):398-409.
Segonds C, et al. J Clin Microbiol 2015; 53(2):398-409.
Gordonia species as emerging causes of continuous-ambulatory-peritoneal-dialysis-related peritonitis identified by 16S rRNA and secA1 gene sequencing and matrix-assisted laser desorption ionization–time of flight mass spectrometry (MALDI-TOF MS)![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Lam JY, et al. J Clin Microbiol 2015; 53(2):671-676.
Lam JY, et al. J Clin Microbiol 2015; 53(2):671-676.
High-throughput mycobacterial interspersed repetitive-unit–variable-number tandem-repeat genotyping for Mycobacterium tuberculosis epidemiological studies![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Gauthier M, et al. J Clin Microbiol 2015; 53(2):498-503.
Gauthier M, et al. J Clin Microbiol 2015; 53(2):498-503.
A diagnostic HIV-1 tropism system based on sequence relatedness![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Edwards S, et al. J Clin Microbiol 2015; 53(2):597-610.
Edwards S, et al. J Clin Microbiol 2015; 53(2):597-610.
Accurate quantification of episomal HIV-1 two-long terminal repeat circles by use of optimized DNA isolation and droplet digital PCR![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Malatnikova E, et al. J Clin Microbiol 2015; 53(2):699-701.
Malatnikova E, et al. J Clin Microbiol 2015; 53(2):699-701.
Use of matrix-assisted laser desorption ionization–time of flight mass spectrometry for identification of molds of the Fusarium genus![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Triest D, et al. J Clin Microbiol 2015; 53(2):465-476.
Triest D, et al. J Clin Microbiol 2015; 53(2):465-476.
Design and evaluation of peptide nucleic acid probes for specific identification of Candida albicans![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Kim HJ, Brehm-Stecher BF. J Clin Microbiol 2015; 53(2): 511-521.
Kim HJ, Brehm-Stecher BF. J Clin Microbiol 2015; 53(2): 511-521.
Microsatellite (STRAf) genotyping cannot differentiate between invasive and colonizing Aspergillus fumigatus isolates![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Escribano P, et al. J Clin Microbiol 2015; 53(2):667-670.
Escribano P, et al. J Clin Microbiol 2015; 53(2):667-670.
Isolation and enrichment of Cryptosporidium DNA and verification of DNA purity for whole-genome sequencing![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Guo Y, et al. J Clin Microbiol 2015; 53(2):641-647.
Guo Y, et al. J Clin Microbiol 2015; 53(2):641-647.
Comparison of matrix-assisted laser desorption ionization–time of flight mass spectrometry and molecular biology techniques for identification of Culicoides (Diptera: Ceratopogonidae) biting midges in Senegal![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Sambou M, et al. J Clin Microbiol 2015; 53(2):410-418.
Sambou M, et al. J Clin Microbiol 2015; 53(2):410-418.
Diagnosis of community-acquired acute respiratory illness: From conventional microbiological methods to molecular detection (multiplex)![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Bouvet D, et al. Pathol Biol (Paris). 2015 Jan 13.
Bouvet D, et al. Pathol Biol (Paris). 2015 Jan 13.
Reducing time to identification of positive blood cultures with MALDI-TOF MS analysis after a 5-h subculture![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Verroken A, et al. Eur J Clin Microbiol Infect Dis. 2015 Feb;34(2):405-13.
Verroken A, et al. Eur J Clin Microbiol Infect Dis. 2015 Feb;34(2):405-13.
A systematic review of matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry compared to routine microbiological methods for the time taken to identify microbial organisms from positive blood cultures![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Dixon P, et al. Eur J Clin Microbiol Infect Dis. 2015 Jan 27.
Dixon P, et al. Eur J Clin Microbiol Infect Dis. 2015 Jan 27.
First experience of a multicenter external quality assessment of molecular 16S rRNA gene detection in bone and joint infections![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Plouzeau C, et al. J Clin Microbiol 2015; 53(2):419-424.
Plouzeau C, et al. J Clin Microbiol 2015; 53(2):419-424.
Epidemiology, Outbreaks, Transmission
Genomic dissection of travel-associated extended-spectrum-beta-lactamase-producing Salmonella enterica Serovar Typhi Isolates Originating from the Philippines: a one-off occurrence or a threat to effective treatment of typhoid fever?![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Hendriksen RS, et al. J Clin Microbiol 2015; 53(2): 677-680.
Hendriksen RS, et al. J Clin Microbiol 2015; 53(2): 677-680.
An atypical outbreak of food-borne botulism due to Clostridium botulinum Types B and E from ham![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Mazuet C, et al. J Clin Microbiol 2015; 53(2): 722-726.
Mazuet C, et al. J Clin Microbiol 2015; 53(2): 722-726.
Molecular and epidemiological review of toxigenic Diphtheria infections in England between 2007 and 2013![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Both L, et al. J Clin Microbiol 2015; 53(2): 567-572.
Both L, et al. J Clin Microbiol 2015; 53(2): 567-572.
Investigating the epidemiology of repeat Chlamydia trachomatis detection after treatment by using C. trachomatis OmpA genotyping![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Kapil R, et al. J Clin Microbiol 2015; 53(2): 546-549.
Kapil R, et al. J Clin Microbiol 2015; 53(2): 546-549.
Evolution of cocirculating varicella-zoster virus genotypes during a chickenpox outbreak in Guinea-Bissau![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Depledge DP, et al. J Virol. 2014 Dec;88(24):13936-46.
Depledge DP, et al. J Virol. 2014 Dec;88(24):13936-46.
Asymptomatic malaria infections: detectability, transmissibility and public health relevance![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Bousema T, et al. Nat Rev Microbiol. 2014 Dec;12(12):833-40.
Bousema T, et al. Nat Rev Microbiol. 2014 Dec;12(12):833-40.
Evolution, Ecology, Pathogenicity, Populations
Genetic characterization of Shigella flexneri Isolates in Guizhou Province, China![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Li S, et al. PLoS One 2015 Jan 24;10(1):e0116708.
Li S, et al. PLoS One 2015 Jan 24;10(1):e0116708.
Draft genome sequence of Legionella pneumophila D-5864, a serogroup 6 strain![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Morrison SS, et al. Genome Announc 2015 ;3(1).
Morrison SS, et al. Genome Announc 2015 ;3(1).
Dissemination of high-risk clones of extensively drug-resistant Pseudomonas aeruginosa in Colombia![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Correa A, et al. Antimicrob Agents Chemother. 2015 Jan 20.
Correa A, et al. Antimicrob Agents Chemother. 2015 Jan 20.
Epidemic clones, oceanic gene pools and eco-LD in the free living marine pathogen Vibrio parahaemolyticus![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Cui Y, et al. Mol Biol Evol. 2015 Jan 19.
Cui Y, et al. Mol Biol Evol. 2015 Jan 19.
Local evolutionary patterns of human respiratory syncytial virus derived from whole genome sequencing![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Agoti CN, et al. J Virol. 2015 Jan 21.
Agoti CN, et al. J Virol. 2015 Jan 21.
Recent population expansions of hepatitis B virus in the United States![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Ramachandran S, et al. J Virol. 2014 Dec;88(24):13971-80.
Ramachandran S, et al. J Virol. 2014 Dec;88(24):13971-80.
Complete genome sequence of MneRV2, the pig-tailed macaque RV2 rhadinovirus, and evolutionary relationship with rhesus macaque RRV and human herpesvirus 8/KSHV![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Bruce AG, et al. J Virol. 2015 Jan 21.
Bruce AG, et al. J Virol. 2015 Jan 21.
Proteomics analyses for the global proteins in the brain tissues of different human prion diseases![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Shi Q, et al. Mol Cell Proteomics. 2015 Jan 23.
Shi Q, et al. Mol Cell Proteomics. 2015 Jan 23.
Host-Pathogen Interactions
A new method for estimating species age supports the co-existence of malaria parasites and their mammalian hosts
Silva JC, et al. Mol Biol Evol. 2015 Jan 13.
Silva JC, et al. Mol Biol Evol. 2015 Jan 13.
Comment:
U of Maryland-led statistical study points to co-evolution of Plasmodium parasite, mammalian hosts
Thomas UG. GenomeWeb, Jan 26, 2015.
U of Maryland-led statistical study points to co-evolution of Plasmodium parasite, mammalian hosts
Thomas UG. GenomeWeb, Jan 26, 2015.
Genomic assays for Epstein–Barr virus-positive gastric adenocarcinoma![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Gulley ML Exp Mol Med. 2015 Jan 23;47:e134.
Gulley ML Exp Mol Med. 2015 Jan 23;47:e134.
Microbiota that affect risk for Shigellosis in children in low-income countries![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Lindsay B, et al. Emerg Infect Dis. 2015 Feb;21(2):242-250.
Lindsay B, et al. Emerg Infect Dis. 2015 Feb;21(2):242-250.
Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Hu Z, et al. Nat Genet 2015; 47: 158–163.
Hu Z, et al. Nat Genet 2015; 47: 158–163.
RNA populations in immunocompromised patients as reservoirs for novel norovirus variants![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
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Vega E, et al. J Virol. 2014 Dec;88(24):14184-96.
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HIV-1 adaptation to HLA: a window into virus–host immune interactions
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Methods
Bayesian models for syndrome- and gene-specific probabilities of novel variant pathogenicity![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
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Ruklisa D, et al. Genome Med 2015; 7:5.
Comment:
Variant interpretation through Bayesian fusion of frequency and genomic knowledge![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
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Methods of integrating data to uncover genotype–phenotype interactions![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
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Ritchie MD, et al. Nat Rev Genet 2015; 16: 85–97.
Policy
Potential risks and benefits of gain-of-function research: Summary of a workshop
(book)
National Research Council and National Institute of Medicine. 2015.
National Research Council and National Institute of Medicine. 2015.
Reviews, News and Commentaries
Mystery childhood paralysis stumps researchers![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Ewen Callaway, Nature News, Jan 28, 2015
Ewen Callaway, Nature News, Jan 28, 2015
Use of MDx tests for animal health on the rise, but cost concerns present significant hurdle![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Johnson M. GenomeWeb, Jan 26, 2015.
Johnson M. GenomeWeb, Jan 26, 2015.
Colorado researchers study 'superbug' for antibiotic resistance on farms![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Reuters, Jan 16, 2015.
Reuters, Jan 16, 2015.
Ebola vaccine to be tested on 30 000 volunteers![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Gulland A. BMJ 2015;350:h448.
Gulland A. BMJ 2015;350:h448.
Tekmira aims to follow path blazed in HCV to tackle HBV![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
GenomeWeb, Jan 26, 2015.
GenomeWeb, Jan 26, 2015.
Taiwanese firm developing optoelectronic single-molecule sequencing platform![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Karow J. GenomeWeb, Jan 27, 2015.
Karow J. GenomeWeb, Jan 27, 2015.
The new scientific revolution: Reproducibility at last![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Achenbach J. Washington Post, Jan 27, 2015.
Achenbach J. Washington Post, Jan 27, 2015.
Scientists want to release millions of genetically-modified mosquitos in Florida. Here's why.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Thielking M. Vox, Jan 26, 2015.
Thielking M. Vox, Jan 26, 2015.
Nanopore sequencing for clinical diagnostics![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Jones B. Nat Rev Genet 2015; 16: 68.
Jones B. Nat Rev Genet 2015; 16: 68.
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Boinett CJ, Cain AK. Nat Rev Microbiol. 2014 Dec;12(12):795.
Melioidosis diagnostic workshop, 2013![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Hoffmaster AR, et al. Emerg Infect Dis 2015 Feb;21(2).
Hoffmaster AR, et al. Emerg Infect Dis 2015 Feb;21(2).
Climate change and infectious disease: time for a new normal?![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
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Heffernan C. Lancet Infect Dis 2015; 15(2): 143–144.
How the current West African Ebola virus disease epidemic is altering views on the need for vaccines and is galvanizing a global effort to field-test leading candidate vaccines![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
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Levine MM, et al. J Infect Dis 2015; 211(4): 504-507.
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