Advanced Molecular Detection Clips Database|AMD Clips|PHGKB

Advanced Molecular Detection Clips Database|AMD Clips|PHGKB

Publication Date: Dec 12, 2019

Advanced Molecular Detection Clips Content

• News
• Methods / Tools
• Evolution / Ecology / Populations
• Pathogenicity / Antimicrobial Resistance
• Detection / Diagnosis
• Epidemiology / Outbreaks / Transmission
• Antimicrobials / Vaccines / Interventions
• Host-Microbe Interactions

NEWS

• FDA authorizes marketing of diagnostic test that uses novel technology to detect MRSA bacteria
  FDA, Dec 5, 2019.
• Early Research Sheds Light on Stopping C. Diff in Its Tracks
  Walker M. MedPage Today, Dec 5, 2019.

METHODS / TOOLS

• Mashtree: a rapid comparison of whole genome sequence files
  Katz L, et al. Journal of Open Source Software 2019; 4(44): 1762 
• Systematic processing of ribosomal RNA gene amplicon sequencing data.
  Tremblay Julien et al. GigaScience 2019 Dec (12)
• Backward compatibility of whole genome sequencing data with MLVA typing using a new MLVAtype shiny application for Vibrio cholerae.
  Ambroise Jérôme et al. PloS one 2019 (12) e0225848
• The Transformation of Reference Microbiology Methods and Surveillance for Salmonella With the Use of Whole Genome Sequencing in England and Wales.
  Chattaway Marie Anne et al. Frontiers in public health 2019 317 
• Computational pan-genome mapping and pairwise SNP-distance improve detection of Mycobacterium tuberculosis transmission clusters.
  Jandrasits Christine et al. PLoS computational biology 2019 Dec (12) e1007527
• Multiscale analysis for patterns of Zika virus genotype emergence, spread, and consequence.
  Borucki Monica K et al. PloS one 2019 (12) e0225699

EVOLUTION / ECOLOGY / POPULATIONS

• Isolation and phylogenomic analysis of Buffalopox virus from Human and Buffaloes in India.
  Yadav Pragya D et al. Virus research 2019 Dec 197836 

PATHOGENICITY / ANTIMICROBIAL RESISTANCE

• Genetic variation associated with infection and the environment in the accidental pathogen Burkholderia pseudomallei .
  Chewapreecha Claire et al. Communications biology 2019 428
• A comprehensive account of Escherichia coli Sequence Type 131 in wastewater reveals an abundance of fluoroquinolone resistant clade A strains.
  Finn Thomas J et al. Applied and environmental microbiology 2019 Dec
• Research and Technological Advances Regarding the Study of the Spread of Antimicrobial Resistance Genes and Antimicrobial-Resistant Bacteria Related to Animal Husbandry.
  Li Na et al. International journal of environmental research and public health 2019 Dec (24)
• Beyond multidrug resistance: Leveraging rare variants with machine and statistical learning models in Mycobacterium tuberculosis resistance prediction.
  Chen Michael L et al. EBioMedicine 2019 May 356-369
• Next-Generation Sequencing: An Eye-Opener for the Surveillance of Antiviral Resistance in Influenza.
  Van Poelvoorde Laura A E et al. Trends in biotechnology 2019 Dec

DETECTION / DIAGNOSIS

• Oxford Nanopore MinION Sequencing Enables Rapid Whole Genome Assembly of Rickettsia typhi in a Resource-Limited Setting.
  Elliott Ivo et al. The American journal of tropical medicine and hygiene 2019 Dec
• Yellow Fever Virus Genotyping Tool and Investigation of Suspected Adverse Events Following Yellow Fever Vaccination.
  Rezende Izabela Maurício de et al. Vaccines 2019 Dec (4)

EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION

• Multiple Sources of the Outbreak of Legionnaires' Disease in Genesee County, Michigan, in 2014 and 2015.
  Smith Anya F et al. Environmental health perspectives 2019 Dec (12) 127001
• Shiga Toxin-Producing E. coli Infections Associated with Romaine Lettuce - United States, 2018.
  Bottichio Lyndsay et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2019 Dec  
• High-resolution micro-epidemiology of parasite spatial and temporal dynamics in a high malaria transmission setting in Kenya.
  Nelson Cody S et al. Nature communications 2019 Dec (1) 5615

ANTIMICROBIALS / VACCINES / INTERVENTIONS

• Antifungal triazole posaconazole targets an early stage of the parechovirus A3 life cycle.
  Rhoden Eric et al. Antimicrobial agents and chemotherapy 2019 Dec 

HOST-MICROBE INTERACTIONS

• Sharing of gut microbial strains between selected individual sets of twins cohabitating for decades.
  Koo Hyunmin et al. PloS one 2019 (12) e0226111

Note:  indicates that at least one CDC-affiliated author;  indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice.

Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by the CDC Office of Public Health Genomics to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.