Volume 34 Number 6 February 12-19, 2015
Antimicrobials, Vaccines, Interventions
Search for novel candidate mutations for metronidazole resistance in Helicobacter pylori using next-generation sequencing![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Binh TT, et al. Antimicrob Agents Chemother. 2015 Feb 2.
Binh TT, et al. Antimicrob Agents Chemother. 2015 Feb 2.
Evolution of carbapenem-resistant Acinetobacter baumannii revealed through whole-genome sequencing and comparative genomic analysis.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Li H, et al. Antimicrob Agents Chemother. 2015 Feb;59(2):1168-76.
Li H, et al. Antimicrob Agents Chemother. 2015 Feb;59(2):1168-76.
Characterization of plasmids in extensively drug-resistant Acinetobacter strains isolated in India and Pakistan.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Jones LS, et al. Antimicrob Agents Chemother. 2015 Feb;59(2):923-9.
Jones LS, et al. Antimicrob Agents Chemother. 2015 Feb;59(2):923-9.
Genomic insights into intrinsic and acquired drug resistance mechanisms in Achromobacter xylosoxidans.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Hu Y, et al. Antimicrob Agents Chemother. 2015 Feb;59(2):1152-61.
Hu Y, et al. Antimicrob Agents Chemother. 2015 Feb;59(2):1152-61.
Complete nucleotide sequence of the IncN plasmid encoding IMP-6 and CTX-M-2 from emerging carbapenem-resistant Enterobacteriaceae in Japan.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Kayama S, et al. Antimicrob Agents Chemother. 2015 Feb;59(2):1356-9.
Kayama S, et al. Antimicrob Agents Chemother. 2015 Feb;59(2):1356-9.
Dissemination of NDM metallo-β-lactamase genes among clinical isolates of Enterobacteriaceae collected during the SMART Global Surveillance Study from 2008 to 2012.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Biedenbach D, et al. Antimicrob Agents Chemother. 2015 Feb;59(2):826-30.
Biedenbach D, et al. Antimicrob Agents Chemother. 2015 Feb;59(2):826-30.
Microbiome changes in healthy volunteers treated with GSK1322322, a novel antibiotic targeting bacterial peptide deformylase.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Arat S, et al. Antimicrob Agents Chemother. 2015 Feb;59(2):1182-92.
Arat S, et al. Antimicrob Agents Chemother. 2015 Feb;59(2):1182-92.
G1P[8] species A rotavirus over 27years - pre- and post-vaccination eras - in Brazil: Full genomic constellation analysis and no evidence for selection pressure by Rotarix® vaccine.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
da Silva MF, et al. Infect Genet Evol. 2015 Mar;30:206-18.
da Silva MF, et al. Infect Genet Evol. 2015 Mar;30:206-18.
Safety and immunogenicity of DNA vaccines encoding Ebolavirus and Marburgvirus wild-type glycoproteins in a phase I clinical trial.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Sarwar UN, et al. J Infect Dis. 2015 Feb 15;211(4):549-57.
Sarwar UN, et al. J Infect Dis. 2015 Feb 15;211(4):549-57.
Application of a 7-target pyrosequencing assay to improve the detection of neuraminidase inhibitor resistant influenza A(H3N2) viruses![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Tamura D, et al. Antimicrob Agents Chemother. 2015 Feb 2.
Tamura D, et al. Antimicrob Agents Chemother. 2015 Feb 2.
Independent emergence of artemisinin resistance mutations among Plasmodium falciparum in Southeast Asia.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Takala-Harrison S, et al. J Infect Dis. 2015 Mar 1;211(5):670-9.
Takala-Harrison S, et al. J Infect Dis. 2015 Mar 1;211(5):670-9.
Absence of putative artemisinin resistance mutations among Plasmodium falciparum in Sub-Saharan Africa: A molecular epidemiologic study.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Taylor SM, et al. J Infect Dis. 2015 Mar 1;211(5):680-8.
Taylor SM, et al. J Infect Dis. 2015 Mar 1;211(5):680-8.
The emergence of resistance to the benzimidazole anthlemintics in parasitic nematodes of livestock is characterised by multiple independent hard and soft selective sweeps.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Redman E, et al. PLoS Negl Trop Dis. 2015 Feb 6;9(2):e0003494.
Redman E, et al. PLoS Negl Trop Dis. 2015 Feb 6;9(2):e0003494.
Detection and Diagnosis
Molecular analysis and antimicrobial susceptibility of enterotoxigenic Escherichia coli from diarrheal patients.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Pan H, et al. Diagn Microbiol Infect Dis. 2015 Feb;81(2):126-31.
Pan H, et al. Diagn Microbiol Infect Dis. 2015 Feb;81(2):126-31.
Matrix-assisted laser desorption ionization-time of flight mass spectrometry identifies Pseudomonas aeruginosa high-risk clones.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Cabrolier N, et al. J Clin Microbiol. 2015 Feb 4.
Cabrolier N, et al. J Clin Microbiol. 2015 Feb 4.
Fusobacterium nucleatum subspecies identification by matrix-assisted laser desorption/ionization time of flight mass spectrometry.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Nie S, et al. J Clin Microbiol. 2015 Feb 4.
Nie S, et al. J Clin Microbiol. 2015 Feb 4.
Fluorescent immunochromatography for rapid and sensitive typing of seasonal influenza viruses![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Sakurai A, et al. PLoS One 2015 Feb 4;10(2):e0116715.
Sakurai A, et al. PLoS One 2015 Feb 4;10(2):e0116715.
The cryptococcal antigen lateral flow assay: A point-of-care diagnostic at an opportune time.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Tang MW, et al. Crit Rev Microbiol. 2015 Jan 23:1-9.
Tang MW, et al. Crit Rev Microbiol. 2015 Jan 23:1-9.
Detection of Rickettsia spp in Ticks by MALDI-TOF MS.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Yssouf A, et al. PLoS Negl Trop Dis. 2015 Feb 6;9(2):e0003473.
Yssouf A, et al. PLoS Negl Trop Dis. 2015 Feb 6;9(2):e0003473.
Epidemiology, Outbreaks, Transmission
Differential single nucleotide polymorphism analysis of an outbreak caused by Salmonella enterica serovar Manhattan reveals epidemiological details missed by standard pulsed-field gel electrophoresis.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Scaltriti E, et al. J Clin Microbiol. 2015 Feb 4.
Scaltriti E, et al. J Clin Microbiol. 2015 Feb 4.
Emergence of an outbreak-associated Clostridium difficile variant with increased virulence.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Quesada-Gómez C, et al. J Clin Microbiol. 2015 Feb 4.
Quesada-Gómez C, et al. J Clin Microbiol. 2015 Feb 4.
Whole-genome sequencing in hierarchy with pulsed-field gel electrophoresis: the utility of this approach to establish possible sources of MRSA cross-transmission![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Moore G, et al. J Hosp Infect. 2015 Jan 13.
Moore G, et al. J Hosp Infect. 2015 Jan 13.
Tuberculous spondylitis in Russia and prominent role of multidrug-resistant clone Mycobacterium tuberculosis Beijing B0/W148![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Vyazovaya A, et al. Antimicrob Agents Chemother. 2015 Feb 2.
Vyazovaya A, et al. Antimicrob Agents Chemother. 2015 Feb 2.
Evolution and transmission patterns of extensively drug-resistant tuberculosis in China.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Wang F, et al. Antimicrob Agents Chemother. 2015 Feb;59(2):818-25.
Wang F, et al. Antimicrob Agents Chemother. 2015 Feb;59(2):818-25.
Molecular characterization of HIV-1 infection in Northwest Spain (2009-2013): Investigation of the subtype F outbreak.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Paraskevis D, et al. Infect Genet Evol. 2015 Mar;30:96-101.
Paraskevis D, et al. Infect Genet Evol. 2015 Mar;30:96-101.
Evolution, Ecology, Pathogenicity, Populations
Geospatial resolution of human and bacterial diversity with city-scale metagenomics
[PDF 5.56 MB]![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Afshinnekoo E, et al. Cell Systems 2015; 1:1-15.
Afshinnekoo E, et al. Cell Systems 2015; 1:1-15.
Geographically distinct Escherichia coli O157 isolates differ by lineage, shiga toxin genotype, and total shiga toxin production.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Mellor GE, et al. J Clin Microbiol. 2015 Feb;53(2):579-86.
Mellor GE, et al. J Clin Microbiol. 2015 Feb;53(2):579-86.
Comparative analysis of super-shedder strains of Escherichia coli O157:H7 reveals distinctive genomic features and a strongly aggregative adherent phenotype on bovine rectoanal junction squamous epithelial cells![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Cote R, et al. PLoS One 2015 Feb 9;10(2):e0116743.
Cote R, et al. PLoS One 2015 Feb 9;10(2):e0116743.
Genomic sequences of six botulinum neurotoxin-producing strains representing three clostridial species illustrate the mobility and diversity of botulinum neurotoxin genes.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Smith TJ, et al. Infect Genet Evol. 2015 Mar;30:102-13.
Smith TJ, et al. Infect Genet Evol. 2015 Mar;30:102-13.
Identification and characterization of regions of difference between the Salmonella Gallinarum biovar Gallinarum and the Salmonella Gallinarum biovar Pullorum genomes.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Batista DF, et al. Infect Genet Evol. 2015 Mar;30:74-81.
Batista DF, et al. Infect Genet Evol. 2015 Mar;30:74-81.
Phylogenetic analysis of environmental Legionella pneumophila isolates from an endemic area (Alcoy, Spain).![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Sánchez-Busó L, et al. Infect Genet Evol. 2015 Mar;30:45-54.
Sánchez-Busó L, et al. Infect Genet Evol. 2015 Mar;30:45-54.
Finer characterization of Mycobacterium tuberculosis using spoligotyping and 15-loci MIRU-VNTRs reveals phylogeographical specificities of isolates circulating in Guyana and Suriname.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Streit E, et al. Infect Genet Evol. 2015 Mar;30:114-9
Streit E, et al. Infect Genet Evol. 2015 Mar;30:114-9
Genome sequence of enterovirus D68 and clinical disease, Thailand.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Vongpunsawad S, et al. Emerg Infect Dis. 2015 Feb;21(2):384.
Vongpunsawad S, et al. Emerg Infect Dis. 2015 Feb;21(2):384.
Genome characterization of a GII.6 norovirus strain identified in China.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Xue L, et al. Infect Genet Evol. 2015 Feb 4.
Xue L, et al. Infect Genet Evol. 2015 Feb 4.
Molecular epidemiology of echoviruses 11 and 30 in Russia: Different properties of genotypes within an enterovirus serotype.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Yarmolskaya MS, et al. Infect Genet Evol. 2015 Mar;30:244-8.
Yarmolskaya MS, et al. Infect Genet Evol. 2015 Mar;30:244-8.
Genetic and antigenic analysis of foot-and-mouth disease virus serotype O responsible for outbreaks in India during 2013.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Subramaniam S, et al. Infect Genet Evol. 2015 Mar;30:59-64.
Subramaniam S, et al. Infect Genet Evol. 2015 Mar;30:59-64.
Homologous recombination in pestiviruses: Identification of three putative novel events between different subtypes/genogroups.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Weber MN, et al. Infect Genet Evol. 2015 Mar;30:219-24.
Weber MN, et al. Infect Genet Evol. 2015 Mar;30:219-24.
Molecular characterization of a new mosaic simian immunodeficiency virus in a naturally infected tantalus monkey (Chlorocebus tantalus) from Cameroon: A challenge to the virus-host co-evolution of SIVagm in African green monkeys.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Ayouba A, et al. Infect Genet Evol. 2015 Mar;30:65-73.
Ayouba A, et al. Infect Genet Evol. 2015 Mar;30:65-73.
A new member of the pteropine orthoreovirus species isolated from fruit bats imported to Italy.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Lorusso A, et al. Infect Genet Evol. 2015 Mar;30:55-8.
Lorusso A, et al. Infect Genet Evol. 2015 Mar;30:55-8.
Plasmodium falciparum field isolates from areas of repeated emergence of drug resistant malaria show no evidence of hypermutator phenotype.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Brown TS, et al. Infect Genet Evol. 2015 Mar;30:318-22.
Brown TS, et al. Infect Genet Evol. 2015 Mar;30:318-22.
Multilocus typing and population structure of Cryptosporidium from children in Zaragoza, Spain.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Ramo A, et al. Infect Genet Evol. 2015 Feb 6.
Ramo A, et al. Infect Genet Evol. 2015 Feb 6.
Multilocus sequence typing approach for a broader range of species of Leishmania genus: Describing parasite diversity in Argentina.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Marco JD, et al. Infect Genet Evol. 2015 Mar;30:308-17.
Marco JD, et al. Infect Genet Evol. 2015 Mar;30:308-17.
Development of a multilocus sequence typing scheme for the study of Anaplasma marginale population structure over space and time.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Guillemi EC, et al. Infect Genet Evol. 2015 Mar;30:186-94.
Guillemi EC, et al. Infect Genet Evol. 2015 Mar;30:186-94.
Host-Pathogen Interactions
The dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetes![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Kostic AD, et al. Cell Host Microbe, Feb 5, 2015.
Kostic AD, et al. Cell Host Microbe, Feb 5, 2015.
Association between Helicobacter spp. infections and hepatobiliary malignancies: A review![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Segura-López FK, et al. World J Gastroenterol. 2015 Feb 7;21(5):1414-1423.
Segura-López FK, et al. World J Gastroenterol. 2015 Feb 7;21(5):1414-1423.
Influence of IL10 gene polymorphisms on the severity of liver fibrosis and susceptibility to liver cirrhosis in HBV/HCV-infected patients.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Guo PF, et al. Infect Genet Evol. 2015 Mar;30:89-95.
Guo PF, et al. Infect Genet Evol. 2015 Mar;30:89-95.
Wound healing genes and susceptibility to cutaneous leishmaniasis in Brazil: Role of COL1A1.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Almeida L, et al. Infect Genet Evol. 2015 Mar;30:225-9.
Almeida L, et al. Infect Genet Evol. 2015 Mar;30:225-9.
Multi-locus analysis of Giardia duodenalis from nonhuman primates kept in zoos in China: Geographical segregation and host-adaptation of assemblage B isolates.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Karim MR, et al. Infect Genet Evol. 2015 Mar;30:82-8.
Karim MR, et al. Infect Genet Evol. 2015 Mar;30:82-8.
Methods
Accurate, multi-kb reads resolve complex populations and detect rare microorganisms.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Sharon I, et al. Genome Res. 2015 Feb 9.
Sharon I, et al. Genome Res. 2015 Feb 9.
Comment:
Metagenomic sequencing with synthetic long reads illustrates vast microbial diversity![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Heger M. GenomeWeb, Feb 10, 2015.
Metagenomic sequencing with synthetic long reads illustrates vast microbial diversity
Heger M. GenomeWeb, Feb 10, 2015.
Reconstructing (super)trees from data sets with missing distances: Not all is lost.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Kettleborough G, et al. Mol Biol Evol. 2015 Feb 4.
Kettleborough G, et al. Mol Biol Evol. 2015 Feb 4.
Bayesian inference of infectious disease transmission from whole-genome sequence data![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Didelot X, et al. Mol Biol Evol. 2014;31(7):1869-79.
Didelot X, et al. Mol Biol Evol. 2014;31(7):1869-79.
Recombination in viruses: Mechanisms, methods of study, and evolutionary consequences.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Pérez-Losada M, et al. Infect Genet Evol. 2015 Mar;30C:296-307.
Pérez-Losada M, et al. Infect Genet Evol. 2015 Mar;30C:296-307.
Within-host nucleotide diversity of virus populations: Insights from next-generation sequencing.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Nelson CW, Hughes AL. Infect Genet Evol. 2015 Mar;30C:1-7.
Nelson CW, Hughes AL. Infect Genet Evol. 2015 Mar;30C:1-7.
Accurate quantification of episomal HIV-1 two-long terminal repeat circles by use of optimized DNA isolation and droplet digital PCR.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Malatinkova E, et al. J Clin Microbiol. 2015 Feb;53(2):699-701.
Malatinkova E, et al. J Clin Microbiol. 2015 Feb;53(2):699-701.
Reviews, News and Commentaries
Google to reshape how it provides health information, Mayo Clinic joins as a partner![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Verel D. MedCity News, Feb 10, 2015.
Verel D. MedCity News, Feb 10, 2015.
As Ebola epidemic begins to slow, trials of drugs and vaccines speed up![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Kuehn BM. JAMA, Feb 11, 2015.
Kuehn BM. JAMA, Feb 11, 2015.
New York’s Chief Medical Examiner seeks to lead in DNA research![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vtDSGMI-yEezW7P4xVGYYkjlbjLLdcDfSqDf3al8Q8qcsxBiogiQj8SslVDfzwez2cIM6UbpbkGJDzq1MNEd92BUmj0NVtjfabKOQqWNS3ENvRw7ClRekD=s0-d)
Goodman JD. New York Times, Feb 9, 2015.
Goodman JD. New York Times, Feb 9, 2015.
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