Volume 34 Number 19 May 14-21, 2015
Antimicrobials, Vaccines, Interventions
Towards high-throughput immunomics for infectious diseases: use of next-generation peptide microarrays for rapid discovery and mapping of antigenic determinants.
Carmona SJ et al. Mol. Cell Proteomics 2015 Apr 28.
Carmona SJ et al. Mol. Cell Proteomics 2015 Apr 28.
Parallel evolutionary pathways to antibiotic resistance selected by biocide exposure.
Webber MA et al. J. Antimicrob. Chemother. 2015 May 7.
Webber MA et al. J. Antimicrob. Chemother. 2015 May 7.
Intrapatient evolutionary dynamics of human immunodeficiency virus type 1 in individuals undergoing alternative treatment strategies with reverse transcriptase inhibitors.
Kayondo J et al. AIDS Res. Hum. Retroviruses 2015 May 8.
Kayondo J et al. AIDS Res. Hum. Retroviruses 2015 May 8.
Detection and Diagnosis
Rapid, accurate, and on-site detection of C. difficile in stool samples.
Bomers MK et al. Am. J. Gastroenterol. 2015 Apr (4) 588-94
Bomers MK et al. Am. J. Gastroenterol. 2015 Apr (4) 588-94
Epidemiology, Outbreaks, Transmission
Self-collected buccal swabs and rapid, real-time PCR during a large measles outbreak in Wales: Evidence for the protective effect of prior MMR immunisation.
Moore C et al. J. Clin. Virol. 2015 Jun 1-7
Moore C et al. J. Clin. Virol. 2015 Jun 1-7
Acute gastroenteritis outbreak caused by a GII.6 norovirus.
Luo Ling-Fei et al. World J. Gastroenterol. 2015 May 7. (17) 5295-302
Luo Ling-Fei et al. World J. Gastroenterol. 2015 May 7. (17) 5295-302
Evolution, Ecology, Pathogenicity, Populations
Full genomic characterization and phylogenetic analysis of a zoonotic human G8P[14] rotavirus strain detected in a sample from Guatemala.
Gautam R et al. Infect. Genet. Evol. 2015 May 5. (CDC Author)
Gautam R et al. Infect. Genet. Evol. 2015 May 5. (CDC Author)
Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events.
Wong VK et al. Nat. Genet. 2015 May 11. (CDC Author)
Wong VK et al. Nat. Genet. 2015 May 11. (CDC Author)
Molecular epidemiology of carbapenemase-producing Escherichia coli and the prevalence of ST131 subclone H30 in Shanghai, China.
Zhang F et al. Eur. J. Clin. Microbiol. Infect. Dis. 2015 Jun (6) 1263-9
Zhang F et al. Eur. J. Clin. Microbiol. Infect. Dis. 2015 Jun (6) 1263-9
Distribution of pilus islands and alpha-like protein genes of group B Streptococcus colonized in pregnant women in Beijing, China.
Lu B et al. Eur. J. Clin. Microbiol. Infect. Dis. 2015 Jun (6) 1173-9
Lu B et al. Eur. J. Clin. Microbiol. Infect. Dis. 2015 Jun (6) 1173-9
Genetic diversity and evolutionary dynamics of Ebola virus in Sierra Leone
Tong YG, et al. Nature, May 13, 2015.
Tong YG, et al. Nature, May 13, 2015.
Multilocus sequence typing of Australian Streptococcus suis type 2 by MALDI-TOF mass spectrometry analysis of PCR amplicons.
Groves MD et al. Vet. Microbiol. 2015 Jun 12. (3-4) 394-7
Groves MD et al. Vet. Microbiol. 2015 Jun 12. (3-4) 394-7
Characterization of the pathogenome and phylogenomic classification of enteropathogenic Escherichia coli of the O157:non-H7 serotypes.
Sanjar F et al. Pathog Dis 2015 May 10.
Sanjar F et al. Pathog Dis 2015 May 10.
Molecular and whole genome characterization of Giardia waterborne isolates: Mixes are common in surface water.
Prystajecky N et al. Appl. Environ. Microbiol. 2015 May 8.
Prystajecky N et al. Appl. Environ. Microbiol. 2015 May 8.
Bayesian phylogeographic analyses clarify the origin of the HIV-1 subtype A variant circulating in former Soviet Union's countries.
Díez-Fuertes F et al. Infect. Genet. Evol. 2015 May 5.
Díez-Fuertes F et al. Infect. Genet. Evol. 2015 May 5.
Antimicrobial susceptibility of travel-related Salmonella enterica serovar Typhi isolates detected in Switzerland (2002-2013) and molecular characterization of quinolone resistant isolates.
Nüesch-Inderbinen M et al. BMC Infect. Dis. 2015 May 12. (1) 212
Nüesch-Inderbinen M et al. BMC Infect. Dis. 2015 May 12. (1) 212
Insights into the amplification of bacterial resistance to erythromycin in activated sludge.
Guo Mei-Ting et al. Chemosphere 2015 May 5. 79-85
Guo Mei-Ting et al. Chemosphere 2015 May 5. 79-85
Host-Microbe Interactions
Identifying personal microbiomes using metagenomic codes
Franzosa EA, et al. Proc Nat Acad Sci, May 11, 2015.
Franzosa EA, et al. Proc Nat Acad Sci, May 11, 2015.
Administration of spores of nontoxigenic Clostridium difficile strain M3 for prevention of recurrent C. difficile infection: a randomized clinical trial.
Gerding DN et al. JAMA 2015 May 5. (17) 1719-27
Gerding DN et al. JAMA 2015 May 5. (17) 1719-27
A comprehensive time-course-based multicohort analysis of sepsis and sterile inflammation reveals a robust diagnostic gene set
Sweeney TE, et al. Sci Transl Med 13 May 2015; 7: 287ra71
Sweeney TE, et al. Sci Transl Med 13 May 2015; 7: 287ra71
Methods
Sequencing and beyond: integrating molecular 'omics' for microbial community profiling.
Franzosa EA et al. Nat. Rev. Microbiol. 2015 Apr 27.
Franzosa EA et al. Nat. Rev. Microbiol. 2015 Apr 27.
A platform for leveraging next generation sequencing for routine microbiology and public health use.
Rusu LI et al. Health Inf Sci Syst 2015 (Suppl 1 HISA Big Data in Biomedicine and Healthcare 2013 Con) S7
Rusu LI et al. Health Inf Sci Syst 2015 (Suppl 1 HISA Big Data in Biomedicine and Healthcare 2013 Con) S7
Policy
A global biomedical R&D fund and mechanism for innovations of public health importance.
Balasegaram M et al. PLoS Med. 2015 May (5) e1001831
Balasegaram M et al. PLoS Med. 2015 May (5) e1001831
Reviews, News and Commentaries
Microbiome fingerprints
Yandell K. The Scientist, May 12, 2015.
Yandell K. The Scientist, May 12, 2015.
HIV immunity: rare gene differences offer hope for treatment
Cox D. The Guardian, May 12, 2015.
Cox D. The Guardian, May 12, 2015.
Microbial variation, stability hint at potential forensic uses for human microbiome
GenomeWeb, May 12, 2015.
GenomeWeb, May 12, 2015.
Show me your moves: Updated classics and new techniques help microbiologists get up close and quantitative
Fessenden M. The Scientist, May 1, 2015.
Fessenden M. The Scientist, May 1, 2015.
Gates funds surveillance site to prevent next big epidemic
Gulland A. BMJ 2015;350:h2534
Gulland A. BMJ 2015;350:h2534
Countries are ill prepared to fight antimicrobial resistance, WHO says
Gulland A. BMJ 2015;350:h2340
Gulland A. BMJ 2015;350:h2340
Jennifer Doudna, a pioneer who helped simplify genome editing
Pollack A. New York Times, May 11, 2015.
Pollack A. New York Times, May 11, 2015.
PATHSEEK researchers sequence M. tuberculosis directly, rapidly from sputum samples
GenomeWeb, May 13, 2015.
GenomeWeb, May 13, 2015.
Multi-drug resistant typhoid spreading, according to genomic analysis of over 1K strains
GenomeWeb, May 11, 2015.
GenomeWeb, May 11, 2015.
Microbiomes raise privacy concerns: DNA from microbes living on the human body can be used to identify individuals.
Callaway E. Nature, May 11, 2015.
Callaway E. Nature, May 11, 2015.
WHO approves cepheid Ebola assay for use in affected countries
GenomeWeb, May 13, 2015.
GenomeWeb, May 13, 2015.
Stanford team discovers diagnostic gene set for sepsis; Aims to develop clinical assay
Karow J. GenomeWeb, May 13, 2015.
Karow J. GenomeWeb, May 13, 2015.
Janssen Diagnostics, biocartis collaboration yields prototype HCV, Flu/RSV, flu surveillance tests
Johnson M. GenomeWeb, May 13, 2015.
Johnson M. GenomeWeb, May 13, 2015.
The role of pathogen genomics in assessing disease transmission.
Sintchenko Vitali et al. BMJ 2015 h1314
Sintchenko Vitali et al. BMJ 2015 h1314
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