Volume 35 Number 6 August 5-13, 2015
News/ Reviews/ Commentaries
Research scientists to use network much faster than internet![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Markoff J. New York Times, Jul 31, 2015.
Markoff J. New York Times, Jul 31, 2015.
Researchers turn to NGS to understand growing threat of antibiotic resistance in pathogens![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Heger M. GenomeWeb, Jul 29, 2015
Heger M. GenomeWeb, Jul 29, 2015
UC Berkeley scientists develop ultrafast thermocycling with point-of-care PCR potential![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Han A. GenomeWeb, Aug 3, 2015.
Han A. GenomeWeb, Aug 3, 2015.
California precision medicine effort awards $2.4M to pediatric cancer, infectious disease projects![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
GenomeWeb, Aug 4, 2015.
GenomeWeb, Aug 4, 2015.
UCSF's one-size-fits-all precision medicine test for infection![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Keshavan M. MedCityNews, Aug 4, 2015.
Keshavan M. MedCityNews, Aug 4, 2015.
Johns Hopkins researchers develop handheld chlamydia test using microfluidics, smartphone![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Johnson M. GenomeWeb, Jul 29, 2015.
Johnson M. GenomeWeb, Jul 29, 2015.
NASA team readies MinION for sequencing tests aboard ISS; launch scheduled for March 2016![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Karow J. GenomeWeb, Jul 29, 2015.
Karow J. GenomeWeb, Jul 29, 2015.
Extreme weight loss surgery works, but is it thanks to the knife--or the microbes?![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Leslie M. Science, Aug 4, 2015.
Leslie M. Science, Aug 4, 2015.
This little piggy went to market-but perhaps should have stayed home.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Webby R et al. Clin. Infect. Dis. 2015 Jul 29.
Webby R et al. Clin. Infect. Dis. 2015 Jul 29.
Plague or anthrax on the subway? Think again, says now-corrected study![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Keith R. Retraction Watch (blog), Jul 31, 2015.
Keith R. Retraction Watch (blog), Jul 31, 2015.
Host-directed therapies for tackling multi-drug resistant TB - learning from the Pasteur-Bechamp debates.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Zumla A et al. Clin. Infect. Dis. 2015 Jul 28.
Zumla A et al. Clin. Infect. Dis. 2015 Jul 28.
A novel advanced laboratory diagnosis to guide tuberculosis drug therapy.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Amaral L et al. Recent Pat Antiinfect Drug Discov 2015 Aug 3.
Amaral L et al. Recent Pat Antiinfect Drug Discov 2015 Aug 3.
Molecular studies on ancient M. tuberculosis and M. leprae: methods of pathogen and host DNA analysis.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Witas HW et al. Eur. J. Clin. Microbiol. Infect. Dis. 2015 Jul 26.
Witas HW et al. Eur. J. Clin. Microbiol. Infect. Dis. 2015 Jul 26.
Future directions for the European influenza reference laboratory network in influenza surveillance![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Goddard N, et al. Euro Surveill, Jul 30, 2015.
Goddard N, et al. Euro Surveill, Jul 30, 2015.
Real-time digital pathogen surveillance -- the time is now![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Gardy J, et al. Genome Biol, Jul 30, 2015.
Gardy J, et al. Genome Biol, Jul 30, 2015.
Time for T? Immunoinformatics addresses vaccine design for neglected tropical and emerging infectious diseases.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Terry FE et al. Expert Rev Vaccines 2015 Jan (1) 21-35
Terry FE et al. Expert Rev Vaccines 2015 Jan (1) 21-35
Bioinformatics of antimicrobial resistance in the age of molecular epidemiology.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
McArthur AG et al. Curr. Opin. Microbiol. 2015 Jul 31. 45-50
McArthur AG et al. Curr. Opin. Microbiol. 2015 Jul 31. 45-50
Methods/Tools
Circlator: automated circularization of genome assemblies using long sequencing reads![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Hunt M, et al. bioRxiv, Jul 30, 2015.
Hunt M, et al. bioRxiv, Jul 30, 2015.
Application of the multifactor dimensionality reduction method in evaluation of the roles of multiple genes/enzymes in multidrug-resistant acquisition in Pseudomonas aeruginosa strains.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Yao Z et al. Epidemiol. Infect. 2015 Aug 3. 1-
Yao Z et al. Epidemiol. Infect. 2015 Aug 3. 1-
Evolution/ Ecology/ Populations
Live animal markets in Minnesota: a potential source for emergence of novel influenza A viruses and interspecies transmission.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Choi MJ et al. Clin. Infect. Dis. 2015 Jul 29. (CDC Author)
Choi MJ et al. Clin. Infect. Dis. 2015 Jul 29. (CDC Author)
Redefining the differences in gene content between Yersinia pestis and Yersinia pseudotuberculosis using large-scale comparative genomics ![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Califf K, et al. Microbial Genomics, Jul 1, 2015.
Califf K, et al. Microbial Genomics, Jul 1, 2015.
Phylogenetic characterization of Central-Southern European lineage 2 West Nile virus: Analysis of human outbreaks in Italy and Greece, 2013-2014.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Barzon L et al. Clin. Microbiol. Infect. 2015 Jul 30.
Barzon L et al. Clin. Microbiol. Infect. 2015 Jul 30.
Temporal trends and clonal diversity of penicillin non-susceptible pneumococci from meningitis cases from 1996 to 2012, in Salvador, Brazil.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Dos Santos MS et al. BMC Infect. Dis. 2015 302
Dos Santos MS et al. BMC Infect. Dis. 2015 302
Highly virulent non-O157 EHEC serotypes reflect a similar phylogenetic lineage, giving new insights into the evolution of EHEC.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Eichhorn I et al. Appl. Environ. Microbiol. 2015 Jul 31.
Eichhorn I et al. Appl. Environ. Microbiol. 2015 Jul 31.
Virus isolation, genetic characterization, and seroprevalence of Toscana virus in Algeria.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Alkan C et al. Clin. Microbiol. Infect. 2015 Jul 30.
Alkan C et al. Clin. Microbiol. Infect. 2015 Jul 30.
Detection of the NS3 Q80K polymorphism by Sanger and deep sequencing in hepatitis C virus (HCV) genotype 1a strains in the United Kingdom.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Beloukas A et al. Clin. Microbiol. Infect. 2015 Jul 29.
Beloukas A et al. Clin. Microbiol. Infect. 2015 Jul 29.
Genomic resolution of an aggressive, widespread, diverse and expanding meningococcal serogroup B, C and W lineage.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Lucidarme J et al. J. Infect. 2015 Jul 28.
Lucidarme J et al. J. Infect. 2015 Jul 28.
Genomic sequence of the aflatoxigenic filamentous fungus Aspergillus nomius.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Moore GG et al. BMC Genomics 2015 (1) 551
Moore GG et al. BMC Genomics 2015 (1) 551
Genomic analyses of pneumococci reveal a wide diversity of bacteriocins - including pneumocyclicin, a novel circular bacteriocin.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Bogaardt C et al. BMC Genomics 2015 (1) 554
Bogaardt C et al. BMC Genomics 2015 (1) 554
Influenza A viruses of human origin in swine, Brazil.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Nelson MI et al. Emerging Infect. Dis. 2015 Aug (8) 1339-47
Nelson MI et al. Emerging Infect. Dis. 2015 Aug (8) 1339-47
Genome of emerging norovirus GII.17, United States, 2014.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Parra GI et al. Emerging Infect. Dis. 2015 Aug (8) 1477-9
Parra GI et al. Emerging Infect. Dis. 2015 Aug (8) 1477-9
Schmallenberg virus recurrence, Germany, 2014.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Wernike K et al. Emerging Infect. Dis. 2015 Jul (7) 1202-4
Wernike K et al. Emerging Infect. Dis. 2015 Jul (7) 1202-4
A globally distributed mobile genetic element inhibits natural transformation of Vibrio cholerae.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Dalia AB et al. Proc. Natl. Acad. Sci. U.S.A. 2015 Aug 3.
Dalia AB et al. Proc. Natl. Acad. Sci. U.S.A. 2015 Aug 3.
Pathogenicity / Antimicrobial Resistance
Applying phylogenomics to understand the emergence of Shiga Toxin producing Escherichia coli O157:H7 strains causing severe human disease in the United Kingdom![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Dallman T, et al. Microbial Genomics, Jul 27, 2015.
Dallman T, et al. Microbial Genomics, Jul 27, 2015.
Region specific diversification of the highly virulent serotype 1 streptococcus pneumoniae ![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Cornick JE, et al. Microbial Genomics, Jul 20, 2015.
Cornick JE, et al. Microbial Genomics, Jul 20, 2015.
Enteropathogenic and enteroaggregative E. coli in stools of children with acute gastroenteritis in Davidson County, Tennessee![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Foster MA, et al. Diagn Microbiol Infect Dis, Jul 26, 2015. (CDC Author)
Foster MA, et al. Diagn Microbiol Infect Dis, Jul 26, 2015. (CDC Author)
Cloacibacillus sp., a potential human pathogen associated with bacteremia in Quebec and New Brunswick.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Domingo M-C et al. J. Clin. Microbiol. 2015 Jul 29.
Domingo M-C et al. J. Clin. Microbiol. 2015 Jul 29.
Disease burden of invasive meningococcal disease in the Netherlands between June 1999 and June 2011: A subjective role for serogroup and clonal complex.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Stoof SP et al. Clin. Infect. Dis. 2015 Jun 29.
Stoof SP et al. Clin. Infect. Dis. 2015 Jun 29.
Clinical manifestations and genetic variation of Leishmania infantum and Leishmania tropica in Southern Turkey.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Eroglu F et al. Exp. Parasitol. 2015 Jul 67-74
Eroglu F et al. Exp. Parasitol. 2015 Jul 67-74
Comparison of asymptomatic and symptomatic rhinovirus infections in university students: incidence, species diversity, and viral load.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Granados A et al. Diagn. Microbiol. Infect. Dis. 2015 Aug (4) 292-6
Granados A et al. Diagn. Microbiol. Infect. Dis. 2015 Aug (4) 292-6
Genetic characterization of highly pathogenic avian influenza A(H5N6) virus, Guangdong, China [letter]
Mok CPK, et al. Emerg Infect Dis, Dec 2015.
Mok CPK, et al. Emerg Infect Dis, Dec 2015.
Detection/ Diagnosis
Is PCR the next reference standard for the diagnosis of schistosoma in stool? A comparison with microscopy in Senegal and Kenya.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Meurs L et al. PLoS Negl Trop Dis 2015 Jul (7) e0003959
Meurs L et al. PLoS Negl Trop Dis 2015 Jul (7) e0003959
Molecular method for the detection of Andes hantavirus infection: validation for clinical diagnostics![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Vial C, et al. Diagn Microbiol Infect Dis, Jul 29, 2015.
Vial C, et al. Diagn Microbiol Infect Dis, Jul 29, 2015.
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Polymerase chain reaction, pyrosequencing, and culture of infected and uninfected site skin biopsy specimens cannot identify etiology of cellulitis ![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
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Chalker VJ et al. New Microbes New Infect 2015 Sep 37-40
The evaluation of seven commercial real-time PCR kits for Zaire Ebolavirus using virus-like particles encapsulated EBOV RNA![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
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Genomic assays for identification of chikungunya virus in blood donors, Puerto Rico, 2014.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Chiu CY et al. Emerging Infect. Dis. 2015 Aug (8) 1409-13
Chiu CY et al. Emerging Infect. Dis. 2015 Aug (8) 1409-13
Direct identification of major gram-negative pathogens in respiratory specimens by respiFISH® HAP Gram (-) Panel, a beacon-based FISH methodology.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
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Design and application of a core genome multilocus sequence typing scheme for investigation of Legionnaires' disease incidents.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
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Differentiation of acinetobacter genomic species 13BJ/14TU from acinetobacter haemolyticus using MALDI - TOF MS.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
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The Rapid-Heat LAMPellet Method: A potential diagnostic method for human urogenital schistosomiasis.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
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Epidemiology/ Outbreaks/ Transmission
A year of infection in the intensive care unit: prospective whole genome sequencing of bacterial clinical isolates reveals cryptic transmissions and novel microbiota.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
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Roach DJ et al. PLoS Genet. 2015 Jul (7) e1005413
Outbreak of salmonella enteritidis phage type 13a infection in Sweden linked to imported dried-vegetable spice mixes, December 2014 to July 2015![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
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Jernberg C, et al. Euro Surveill 2015;20(30):pii=21194.
Long-lasting outbreak of erythromycin- and ciprofloxacin-resistant campylobacter jejuni subspecies jejuni From 2003 to 2013 in men who have sex with men, Quebec, Canada.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
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Antimicrobials/ Vaccines/ Interventions
Diversion of HIV-1 vaccine-induced immunity by gp41-microbiota cross-reactive antibodies![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
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Williams WB, et al. Science, Jul 30, 2015.
HIV-1 subtype diversity among clinical specimens submitted for routine antiviral drug resistance testing in the United States![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
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Germer JJ, et al. Diagn Microbiol Infect Dis, Jul 26, 2015.
Protection against dengue disease by synthetic nucleic acid antibody prophylaxis/immunotherapy.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
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Flingai S et al. Sci Rep 2015 12616
Pretreatment HIV drug resistance increases regimen switches in sub-saharan Africa![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
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Boender TS, et al. Clin Infect Dis, Aug 3, 2015.
HIV-1 VACCINES. Priming a broadly neutralizing antibody response to HIV-1 using a germline-targeting immunogen.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Jardine JG et al. Science 2015 Jul 10. (6244) 156-61
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Using epidemics to map H3 equine influenza virus determinants of antigenicity.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Woodward A et al. Virology 2015 Jul 187-98
Woodward A et al. Virology 2015 Jul 187-98
Host-Microbe Interactions
Growth dynamics of gut microbiota in health and disease inferred from single metagenomic samples![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Korem T, et al. Science, Jul 30, 2015.
Korem T, et al. Science, Jul 30, 2015.
The effect of antibiotics on the microbiome in acute exacerbations of chronic rhinosinusitis.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
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Merkley MA et al. Int Forum Allergy Rhinol 2015 Jul 30.
Fitness-balanced escape determines resolution of dynamic founder virus escape processes in HIV-1 infection.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_tDi6j3k1p9CW3fwK58dJOPh4DhoUIQdEpD6QLKRpbGfeyOoCdYuNJ4Q3hIkmLykwG84cPR6CyxqinRxLL1zVRDPslVF8hxbk6iIx_2XaNoKxQ_Hl9wC8zI=s0-d)
Sunshine JE et al. J. Virol. 2015 Jul 29.
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