Volume 34 Number 13 April 2-9, 2015
Antimicrobials, Vaccines, Interventions
KPC and NDM-1 are harbored by related Enterobacteriaceae strains and plasmid backbones form distinct geographies.
Pesesky MW, et al. Emerging Infectious Diseases, Jun 2015.
Pesesky MW, et al. Emerging Infectious Diseases, Jun 2015.
Large-scale recoding of an arbovirus genome to rebalance its insect versus mammalian preference.
Shen SH et al. Proc. Natl. Acad. Sci. U.S.A. 2015 Mar 30.
Shen SH et al. Proc. Natl. Acad. Sci. U.S.A. 2015 Mar 30.
InSilixa awarded NIH grant to develop point-of-care test for drug-resistant tuberculosisGenomeWeb, Apr 1, 2015.
Collateral sensitivity of antibiotic-resistant microbes.
Pál Csaba et al. Trends Microbiol. 2015 Mar 25.
Pál Csaba et al. Trends Microbiol. 2015 Mar 25.
Molecular assessment of artemisinin resistance markers, polymorphisms in the k13 propeller, and a multidrug-resistance gene in the eastern and western border areas of Myanmar.
Nyunt M et al. Clin. Infect. Dis. 2015 Apr 15. (8) 1208-15
Nyunt M et al. Clin. Infect. Dis. 2015 Apr 15. (8) 1208-15
Detection and Diagnosis
An evaluation of the level of agreement in Bordetella species identification in three United States laboratories during a period of increased pertussis.
Burgos-Rivera B et al. J. Clin. Microbiol. 2015 Mar 25. (CDC Author)
Burgos-Rivera B et al. J. Clin. Microbiol. 2015 Mar 25. (CDC Author)
Comparison of species identification of endocarditis associated viridans streptococci using rnpB genotyping and 2 MALDI-TOF systems.
Isaksson J et al. Diagn. Microbiol. Infect. Dis. 2015 Apr (4) 240-5
Isaksson J et al. Diagn. Microbiol. Infect. Dis. 2015 Apr (4) 240-5
Epidemiology, Outbreaks, Transmission
A novel outbreak enterovirus D68 strain associated with acute flaccid myelitis cases in the USA (2012?14): a retrospective cohort study
Greninger AL, et al. Lancet Infect Dis, Mar 31, 2015.
Greninger AL, et al. Lancet Infect Dis, Mar 31, 2015.
Tracking a tuberculosis outbreak over 21 years: strain-specific single-nucleotide polymorphism typing combined with targeted whole-genome sequencing.
Stucki D et al. J. Infect. Dis. 2015 Apr 15. (8) 1306-16
Stucki D et al. J. Infect. Dis. 2015 Apr 15. (8) 1306-16
Dynamics of MDR Enterobacter cloacae outbreaks in a neonatal unit in Nepal: insights using wider sampling frames and next-generation sequencing.
Stoesser N et al. J. Antimicrob. Chemother. 2015 Apr (4) 1008-15
Stoesser N et al. J. Antimicrob. Chemother. 2015 Apr (4) 1008-15
Clonal outbreak of Plasmodium falciparum infection in Eastern Panama.
Obaldia N et al. J. Infect. Dis. 2015 Apr 1. (7) 1087-96
Obaldia N et al. J. Infect. Dis. 2015 Apr 1. (7) 1087-96
Outbreak of severe zoonotic vaccinia virus infection, Southeastern Brazil.
Abrahão J S et al. Emerging Infect. Dis. 2015 Apr (4) 695-698
Abrahão J S et al. Emerging Infect. Dis. 2015 Apr (4) 695-698
Endoscopic Retrograde Cholangiopancreatography-Associated AmpC Escherichia coli Outbreak.
Wendorf KA et al. Infect Control Hosp Epidemiol 2015 Mar 30. 1-9
Wendorf KA et al. Infect Control Hosp Epidemiol 2015 Mar 30. 1-9
Evolution, Ecology, Pathogenicity, Populations
Mutation rate and genotype variation of Ebola virus from Mali case sequences
Hoenen T, et al. Science, Mar 26, 2015.
Hoenen T, et al. Science, Mar 26, 2015.
Compartmentalized replication of R5 T cell-tropic HIV-1 in the central nervous system early in the course of infection.
Sturdevant CB et al. PLoS Pathog. 2015 Mar (3) e1004720
Sturdevant CB et al. PLoS Pathog. 2015 Mar (3) e1004720
Selective and genetic constraints on pneumococcal serotype switching.
Croucher NJ et al. PLoS Genet. 2015 Mar (3) e1005095
Croucher NJ et al. PLoS Genet. 2015 Mar (3) e1005095
Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis.
Weinert LA et al. Nat Commun 2015 6740
Weinert LA et al. Nat Commun 2015 6740
Capturing the cloud of diversity reveals complexity and heterogeneity of MRSA carriage, infection and transmission.
Paterson GK et al. Nat Commun 2015 6560
Paterson GK et al. Nat Commun 2015 6560
Comparison of whole genome sequences from human and non-human Escherichia coli O26 strains.
Norman KN et al. Front Cell Infect Microbiol 2015 21
Norman KN et al. Front Cell Infect Microbiol 2015 21
Multiple-locus variable-number tandem-repeat analysis of Francisella tularensis from Quebec, Canada.
Antonation KS et al. Lett. Appl. Microbiol. 2015 Apr (4) 328-33
Antonation KS et al. Lett. Appl. Microbiol. 2015 Apr (4) 328-33
Population structure and antimicrobial resistance of invasive serotype IV group B streptococcus, Toronto, Ontario, Canada.
Teatero S et al. Emerging Infect. Dis. 2015 Apr (4) 585-591
Teatero S et al. Emerging Infect. Dis. 2015 Apr (4) 585-591
Sequence variability and geographic distribution of lassa virus, Sierra Leone.
Leski TA et al. Emerging Infect. Dis. 2015 Apr (4) 609-618
Leski TA et al. Emerging Infect. Dis. 2015 Apr (4) 609-618
Co-infection with avian (H7N9) and pandemic (H1N1) 2009 influenza viruses, China.
Zhang W et al. Emerging Infect. Dis. 2015 Apr (4) 715-718
Zhang W et al. Emerging Infect. Dis. 2015 Apr (4) 715-718
Bat coronavirus in Brazil related to Appalachian ridge and porcine epidemic diarrhea viruses.
Simas Paulo VM et al. Emerging Infect. Dis. 2015 Apr (4) 729-731
Simas Paulo VM et al. Emerging Infect. Dis. 2015 Apr (4) 729-731
Host-Pathogen Interactions
Life-threatening influenza and impaired interferon amplification in human IRF7 deficiency
Ciancanelli MJ, et al. Science, Mar 26, 2015.
Ciancanelli MJ, et al. Science, Mar 26, 2015.
Cytomegalovirus infection enhances the immune response to influenza
Furman D, et al. Sci Transl Med 2015;7(281):281ra43
Furman D, et al. Sci Transl Med 2015;7(281):281ra43
Methods
MAFCO: A compression tool for MAF files
Matos LM, et al. PLoS Genetics, Mar 27, 2015.
Matos LM, et al. PLoS Genetics, Mar 27, 2015.
Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequencer.
Kilianski A et al. Gigascience 2015 12
Kilianski A et al. Gigascience 2015 12
A game theoretic framework for analyzing re-identification risk.
Wan Z et al. PLoS ONE 2015 (3) e0120592
Wan Z et al. PLoS ONE 2015 (3) e0120592
Virus-like particle system identifies the endonuclease domain of Crimean-Congo hemorrhagic fever virus.
Devignot S et al. J. Virol. 2015 Mar 25.
Devignot S et al. J. Virol. 2015 Mar 25.
Global avian influenza surveillance in wild birds: A strategy to capture viral diversity.
Machalaba CC et al. Emerging Infect. Dis. 2015 Apr (4)
Machalaba CC et al. Emerging Infect. Dis. 2015 Apr (4)
Policy
A consensus development conference model for establishing health policy for surveillance and screening of antimicrobial-resistant organisms.
Buick S et al. Clin. Infect. Dis. 2015 Apr 1. (7) 1095-101
Buick S et al. Clin. Infect. Dis. 2015 Apr 1. (7) 1095-101
Reviews, News and Commentaries
Enzyme improves CRISPR, by Grens K. The Scientist, Apr 1, 2015.
Smartphone HIV test,
Nature Biotechnology 2015;33:221
Nature Biotechnology 2015;33:221
Obama Seeks to Double Funding to Fight Antibiotic Resistance, Tavernise S, Shear MD. New York Times, Mar 27, 2015.
Liberia Recommends Ebola Survivors Practice Safe Sex Indefinitely, Fink S. New York Times, Mar 28, 2015.
Ebola's fast evolution questioned,
Callaway E. Nature, Mar 26, 2015.
Callaway E. Nature, Mar 26, 2015.
Genome Canada launches C$30.5M genomics innovation network, GenomeWeb, Mar 31, 2015
Outbreak of EV-D68 detected by cross-reactivity in GenMark respiratory viral panel Johnson M. GenomeWeb, Mar 31, 2015.
Enterovirus 68 may be linked to paralysis in children, study says Saint Louis C. New York Times, Mar 31, 2015.
Researchers demonstrate amplicon sequencing on MinIon with eye toward point-of-care applications Heger M, Genome Web, Mar 26, 2015.
MeMed rolling out proteomic test to distinguish between bacterial, viral infections Bonislawski A. GenomeWeb, Mar 27, 2015.
Catalog of earth microbes could help find alien life Cofield C. Yahoo News, Apr 1, 2015.
Speeding new antibiotics to market: a fake fix?
Doshi Peter et al. BMJ 2015 h1453
Doshi Peter et al. BMJ 2015 h1453
Viral cell-to-cell transmission-why less is more.
Richardson Lauren A et al. PLoS Biol. 2015 Mar (3) e1002095
Richardson Lauren A et al. PLoS Biol. 2015 Mar (3) e1002095
Successful test launch for nanopore sequencing.
Loman Nicholas J et al. Nat. Methods 2015 Mar 31. (4) 303-304
Loman Nicholas J et al. Nat. Methods 2015 Mar 31. (4) 303-304
A microbiological revolution meets an ancient disease: improving the management of tuberculosis with genomics.
Wlodarska Marta et al. Clin. Microbiol. Rev. 2015 Apr (2) 523-539
Wlodarska Marta et al. Clin. Microbiol. Rev. 2015 Apr (2) 523-539
Developing vaccines for an aging population
Black S, et al. Sci Transl Med 2015;7(281):281ps8
Black S, et al. Sci Transl Med 2015;7(281):281ps8
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