Volume 35 Number 5 July 30 - August 6, 2015
News/ Reviews/ Commentaries
Wayne State awarded $4.8M grant to optimize antibiotic use for drug-resistant infections ![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
GenomeWeb, Jul 27, 2015.
GenomeWeb, Jul 27, 2015.
Imperfect poultry vax![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Keener AB. The Scientist, Jul 27, 2015.
Keener AB. The Scientist, Jul 27, 2015.
Drug-resistant bacteria possess natural ability to become vulnerable to antibiotics![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
(news release) Washington Univ St. Louis, Jul 13, 2015.
(news release) Washington Univ St. Louis, Jul 13, 2015.
SNP test aims to ID patients who may spontaneously clear HCV![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Johnson M. GenomeWeb, Jul 22, 2015.
Johnson M. GenomeWeb, Jul 22, 2015.
AACC 2015: New mobile DNA test for chlamydia announced![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Bushey R. Bioscience Tech, Jul 29, 2015.
Bushey R. Bioscience Tech, Jul 29, 2015.
The Genesis Engine (Crispr)![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Maxmen A. Wired, Jul 2015.
Maxmen A. Wired, Jul 2015.
Point-of-care testing for respiratory viruses in adults: the current landscape and future potential.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Brendish NJ et al. J. Infect. 2015 Jul 24.
Brendish NJ et al. J. Infect. 2015 Jul 24.
Ebola virus disease: experience and decision making for the first patients outside of Africa.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Stephens DS et al. PLoS Med. 2015 Jul (7) e1001857
Stephens DS et al. PLoS Med. 2015 Jul (7) e1001857
The individualised versus the public health approach to treating Ebola.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Boyles TH et al. PLoS Med. 2015 Jul (7) e1001858
Boyles TH et al. PLoS Med. 2015 Jul (7) e1001858
Genomic epidemiology: Revealing hidden reservoirs for Klebsiella pneumoniae.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Manges AR et al. Clin. Infect. Dis. 2015 Jul 22.
Manges AR et al. Clin. Infect. Dis. 2015 Jul 22.
Near full control of human papillomavirus vaccine types.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Dillner J et al. Lancet Infect Dis 2015 Jul 17.
Dillner J et al. Lancet Infect Dis 2015 Jul 17.
Bringing fungal infections in from the cold![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Sekkides O. Lancet Infect Dis 2015;15:884-885.
Sekkides O. Lancet Infect Dis 2015;15:884-885.
Expanding the molecular toolkit for chlamydia.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Hybiske K et al. Cell Host Microbe 2015 Jul 8. (1) 11-3
Hybiske K et al. Cell Host Microbe 2015 Jul 8. (1) 11-3
Policy
Preliminary guidance related to informed consent for research on dried blood spots obtained through newborn screening ![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
National Institutes of Health. Notice Number: NOT-OD-15-127, Jul 23, 2015.
National Institutes of Health. Notice Number: NOT-OD-15-127, Jul 23, 2015.
Secret service: Government labs should be subject to the same transparent oversight as academic facilities ![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
(editorial) Nature, Jul 29, 2015.
(editorial) Nature, Jul 29, 2015.
Methods/Tools
Three minimal sequences found in Ebola virus genomes and absent from human DNA.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Silva RM et al. Bioinformatics 2015 Aug 1. (15) 2421-5
Silva RM et al. Bioinformatics 2015 Aug 1. (15) 2421-5
MeDuSa: a multi-draft based scaffolder.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Bosi E et al. Bioinformatics 2015 Aug 1. (15) 2443-51
Bosi E et al. Bioinformatics 2015 Aug 1. (15) 2443-51
Power and sample-size estimation for microbiome studies using pairwise distances and PERMANOVA.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Kelly BJ et al. Bioinformatics 2015 Aug 1. (15) 2461-8
Kelly BJ et al. Bioinformatics 2015 Aug 1. (15) 2461-8
Neutral models of microbiome evolution.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Zeng Q et al. PLoS Comput. Biol. 2015 Jul (7) e1004365
Zeng Q et al. PLoS Comput. Biol. 2015 Jul (7) e1004365
Phylogenetic assignment of Mycobacterium tuberculosis Beijing clinical isolates in Japan by maximum a posteriori estimation.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Seto J et al. Infect. Genet. Evol. 2015 Jul 25.
Seto J et al. Infect. Genet. Evol. 2015 Jul 25.
Evolution/ Ecology/ Populations
Genomic characterization of a persistent rubella virus from a case of Fuch' uveitis syndrome in a 73 year old man.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Abernathy E et al. J. Clin. Virol. 2015 Aug 104-9
Abernathy E et al. J. Clin. Virol. 2015 Aug 104-9
Natural rabies infection in a domestic fowl (Gallus domesticus): A report from India.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Baby J et al. PLoS Negl Trop Dis 2015 Jul (7) e0003942
Baby J et al. PLoS Negl Trop Dis 2015 Jul (7) e0003942
Independent emergence of the cosmopolitan Asian chikungunya virus, Philippines 2012.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Tan Kim-K et al. Sci Rep 2015 12279
Tan Kim-K et al. Sci Rep 2015 12279
The Chagas disease domestic transmission cycle in Guatemala: parasite-vector switches and lack of mitochondrial co-diversification between Triatoma dimidiata and Trypanosoma cruzi subpopulations suggest non-vectorial parasite dispersal across the Motagua valley.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Pennington PM et al. Acta Trop. 2015 Jul 24.
Pennington PM et al. Acta Trop. 2015 Jul 24.
Molecular epidemiology and evolution of influenza viruses circulating within European swine between 2009 and 2013.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Watson SJ et al. J. Virol. 2015 Jul 22.
Watson SJ et al. J. Virol. 2015 Jul 22.
Characterisation of hepatitis C virus recombination in Cameroon using non-specific next generation sequencing.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Iles James C et al. J. Clin. Microbiol. 2015 Jul 22.
Iles James C et al. J. Clin. Microbiol. 2015 Jul 22.
Genomic, phylogenetic, and recombinational characterization of herpes simplex virus 2 strains.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Kolb AW et al. J. Virol. 2015 Jun (12) 6427-34
Kolb AW et al. J. Virol. 2015 Jun (12) 6427-34
Pathogenicity / Antimicrobial Resistance
Longitudinal genetic characterization reveals that cell proliferation maintains a persistent HIV type 1 DNA pool during effective HIV therapy.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
von Stockenstrom S et al. J. Infect. Dis. 2015 Aug 15. (4) 596-607
von Stockenstrom S et al. J. Infect. Dis. 2015 Aug 15. (4) 596-607
Intermingled Klebsiella pneumoniae populations between retail meats and human urinary tract infections.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Davis GS et al. Clin. Infect. Dis. 2015 Jul 22.
Davis GS et al. Clin. Infect. Dis. 2015 Jul 22.
Outcomes and susceptibility to neuraminidase inhibitors in individuals infected with different influenza B lineages: the influenza resistance information study.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
van der Vries E et al. J. Infect. Dis. 2015 Jul 9.
van der Vries E et al. J. Infect. Dis. 2015 Jul 9.
Characterization of antibiotic resistance gene abundance and microbiota composition in feces of organic and conventional pigs from four EU countries.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Gerzova L et al. PLoS ONE 2015 (7) e0132892
Gerzova L et al. PLoS ONE 2015 (7) e0132892
Characterization of Escherichia coli-producing extended-spectrum β-Lactamase (ESBL) Isolated from Chicken Slaughterhouses in South Korea.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Lim Jong-Soo et al. Foodborne Pathog. Dis. 2015 Jul 28.
Lim Jong-Soo et al. Foodborne Pathog. Dis. 2015 Jul 28.
Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Holt KE et al. Proc. Natl. Acad. Sci. U.S.A. 2015 Jul 7. (27) E3574-81
Holt KE et al. Proc. Natl. Acad. Sci. U.S.A. 2015 Jul 7. (27) E3574-81
Deep sequencing and phylogenetic analysis of variants resistant to interferon-based protease inhibitor therapy in chronic hepatitis induced by genotype 1b hepatitis C virus.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Sato M et al. J. Virol. 2015 Jun (11) 6105-16
Sato M et al. J. Virol. 2015 Jun (11) 6105-16
Detection/ Diagnosis
Accurate Detection of Binary Toxin Producer from Clostridium difficile by Matrix-assisted Laser Desorption/ionization Time-of-flight Mass Spectrometry![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Kuo SF, et al. Diagn Microbiol Infect Dis, Jul 23, 2015.
Kuo SF, et al. Diagn Microbiol Infect Dis, Jul 23, 2015.
Comparison of multilocus sequence typing, RAPD, and MALDI-TOF mass spectrometry for typing of ?-lactam-resistant Klebsiella pneumoniae strains.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Sachse Svea et al. Diagn. Microbiol. Infect. Dis. 2014 Dec (4) 267-71
Sachse Svea et al. Diagn. Microbiol. Infect. Dis. 2014 Dec (4) 267-71
Clinical Specimen-Direct LAMP: A Useful Tool for the Surveillance of blaOXA-23-Positive Carbapenem-Resistant Acinetobacter baumannii.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Yamamoto Norihisa et al. PLoS ONE 2015 (7) e0133204
Yamamoto Norihisa et al. PLoS ONE 2015 (7) e0133204
"Paper Machine" for Molecular Diagnostics.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Connelly John T et al. Anal. Chem. 2015 Jul 13.
Connelly John T et al. Anal. Chem. 2015 Jul 13.
Multiplexed detection of viral infections using rapid in situ RNA analysis on a chip.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Shaffer SM et al. Lab Chip 2015 Jul 14. (15) 3170-82
Shaffer SM et al. Lab Chip 2015 Jul 14. (15) 3170-82
A multiplex oligonucleotide ligation-PCR as a complementary tool for subtyping of Salmonella Typhimurium.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Wuyts V et al. Appl. Microbiol. Biotechnol. 2015 Jul 25.
Wuyts V et al. Appl. Microbiol. Biotechnol. 2015 Jul 25.
Whole genome mapping as a novel high-resolution typing tool for Legionella pneumophila.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Bosch T et al. J. Clin. Microbiol. 2015 Jul 22.
Bosch T et al. J. Clin. Microbiol. 2015 Jul 22.
Genomically informed surveillance for carbapenem-resistant enterobacteriaceae in a health care system.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Pecora ND et al. MBio 2015 (4)
Pecora ND et al. MBio 2015 (4)
Early insights into the potential of the Oxford nanopore MinION for the detection of antimicrobial resistance genes.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Judge K et al. J. Antimicrob. Chemother. 2015 Jul 28.
Judge K et al. J. Antimicrob. Chemother. 2015 Jul 28.
Real-time PCR for detection of Strongyloides stercoralis in human stool samples from Côte d'Ivoire: diagnostic accuracy, inter-laboratory comparison and patterns of hookworm co-infection.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Becker SL et al. Acta Trop. 2015 Jul 24.
Becker SL et al. Acta Trop. 2015 Jul 24.
The use of next generation sequencing in the diagnosis and typing of respiratory infections.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Thorburn F et al. J. Clin. Virol. 2015 Aug 96-100
Thorburn F et al. J. Clin. Virol. 2015 Aug 96-100
First international external quality assessment of molecular diagnostics for Mers-CoV.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Pas SD et al. J. Clin. Virol. 2015 Aug 81-5
Pas SD et al. J. Clin. Virol. 2015 Aug 81-5
Diagnostic microbiology: the accelerating transition from culture-based to molecular-based methods.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Wilson ML et al. Am. J. Clin. Pathol. 2015 Jun (6) 766-7
Wilson ML et al. Am. J. Clin. Pathol. 2015 Jun (6) 766-7
Evaluation of matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS) for identification and clustering of Neisseria gonorrhoeae.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Carannante A et al. BMC Microbiol. 2015 142
Carannante A et al. BMC Microbiol. 2015 142
Molecular epidemiology of Mycoplasma pneumoniae: genotyping using single nucleotide polymorphisms and SNaPshot™ technology.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Touati A et al. J. Clin. Microbiol. 2015 Jul 22.
Touati A et al. J. Clin. Microbiol. 2015 Jul 22.
Evaluation of the biotyper MALDI-TOF MS system for identification of Staphylococcus species.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Zhu W et al. J. Microbiol. Methods 2015 Jul 13. 14-17
Zhu W et al. J. Microbiol. Methods 2015 Jul 13. 14-17
Epidemiology/ Outbreaks/ Transmission
Echovirus 30 meningitis epidemic followed by an outbreak-specific RT-qPCR.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Österback R et al. J. Clin. Virol. 2015 Aug 7-11
Österback R et al. J. Clin. Virol. 2015 Aug 7-11
Investigation of a leptospirosis outbreak in triathlon participants, Réunion Island, 2013.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Pagès F et al. Epidemiol. Infect. 2015 Jul 27. 1-9
Pagès F et al. Epidemiol. Infect. 2015 Jul 27. 1-9
An outbreak of hepatitis A virus associated with a multi-national inner-city nursery in Glasgow, Scotland.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Li KK et al. J. Clin. Virol. 2015 Aug 12-5
Li KK et al. J. Clin. Virol. 2015 Aug 12-5
HIV-1 diversity, transmission dynamics and primary drug resistance in Angola.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Bártolo I et al. PLoS ONE 2014 (12) e113626
Bártolo I et al. PLoS ONE 2014 (12) e113626
Antimicrobials/ Vaccines/ Interventions
Campylobacter jejuni biofilms contain extracellular DNA and are sensitive to DNase I treatment.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Brown Helen L et al. Front Microbiol 2015 699
Brown Helen L et al. Front Microbiol 2015 699
Imperfect Vaccination Can Enhance the Transmission of Highly Virulent Pathogens.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Read Andrew F et al. PLoS Biol. 2015 Jul (7) e1002198
Read Andrew F et al. PLoS Biol. 2015 Jul (7) e1002198
Identification of hemagglutinin residues responsible for H3N2 antigenic drift during the 2014-2015 influenza season.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Chambers BS et al. Cell Rep 2015 Jul 7. (1) 1-6
Chambers BS et al. Cell Rep 2015 Jul 7. (1) 1-6
Clinical features and viral kinetics in a rapidly cured patient with Ebola virus disease: a case report.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Schibler M et al. Lancet Infect Dis 2015 Jul 17.
Schibler M et al. Lancet Infect Dis 2015 Jul 17.
Evaluation of candidate vaccine approaches for MERS-CoV.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Wang L et al. Nat Commun 2015 7712
Wang L et al. Nat Commun 2015 7712
Host-Microbe Interactions
The Interplay Between Host Genetic Variation, Viral Replication, and Microbial Translocation in Untreated HIV-Infected Individuals.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Perkins Molly R et al. J. Infect. Dis. 2015 Aug 15. (4) 578-84
Perkins Molly R et al. J. Infect. Dis. 2015 Aug 15. (4) 578-84
Exploring Host-Microbiome Interactions using an in Silico Model of Biomimetic Robots and Engineered Living Cells.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Heyde Keith C et al. Sci Rep 2015 11988
Heyde Keith C et al. Sci Rep 2015 11988
The airway microbiome in patients with severe asthma: Associations with disease features and severity.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Huang YJ et al. J. Allergy Clin. Immunol. 2015 Jul 25.
Huang YJ et al. J. Allergy Clin. Immunol. 2015 Jul 25.
Hepatitis B virus genotype B and mutations in basal core promoter and pre-core/core genes associated with acute-on-chronic liver failure: a multicenter cross-sectional study in China.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Yang G et al. Hepatol Int 2014 Oct (4) 508-16
Yang G et al. Hepatol Int 2014 Oct (4) 508-16
The female urinary microbiota in urgency urinary incontinence.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_sTOQXSz98DkiVr599EHle6XoRFsNJKsms-6eK7JZXK2xMEh4thMlRSTLMSBlaucQCBeW87KGynLIASkyNRbuxjTv3aussFzSE6feLWtJAJ_GJDNzJ-NJ1W=s0-d)
Pearce MM et al. Am. J. Obstet. Gynecol. 2015 Jul 22.
Pearce MM et al. Am. J. Obstet. Gynecol. 2015 Jul 22.
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